Abnormal Dosage of Ultraconserved Elements Is Highly Disfavored in Healthy Cells but Not Cancer Cells

por McCole, Ruth B., Fonseka, Chamith Y., Koren, Amnon, Wu, C.-ting
Publicado 2014

Maximizing statistical power to detect differentially abundant cell states with scPOST

por Millard, Nghia, Korsunsky, Ilya, Weinand, Kathryn, Fonseka, Chamith Y., Nathan, Aparna, Kang, Joyce B., Raychaudhuri, Soumya
Publicado 2021

Automated clustering reveals CD4(+) T cell subset imbalances in rheumatoid arthritis

por Mulhearn, Ben, Marshall, Lysette, Sutcliffe, Megan, Hannes, Susan K., Fonseka, Chamith, Hussell, Tracy, Raychaudhuri, Soumya, Barton, Anne, Viatte, Sebastien
Publicado 2023

Oligopaints: highly efficient, bioinformatically designed probes for fluorescence in situ hybridization

por Beliveau, Brian J, Joyce, Eric F, Apostolopoulosa, Nicholas, Yilmaza, Feyza, Fonseka, Chamith Y, McCole, Ruth B, Chang, Yiming, Li, Jin Billy, Senaratne, Tharanga Niroshini, Williams, Benjamin R, Rouillard, Jean-Marie, Wu, Chao-ting
Publicado 2013

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes

por Beliveau, Brian J., Boettiger, Alistair N., Avendaño, Maier S., Jungmann, Ralf, McCole, Ruth B., Joyce, Eric F., Kim-Kiselak, Caroline, Bantignies, Frédéric, Fonseka, Chamith Y., Erceg, Jelena, Hannan, Mohammed A., Hoang, Hien G., Colognori, David, Lee, Jeannie T., Shih, William M., Yin, Peng, Zhuang, Xiaowei, Wu, Chao-ting
Publicado 2015

Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry

por Zhang, Fan, Wei, Kevin, Slowikowski, Kamil, Fonseka, Chamith Y., Rao, Deepak A., Kelly, Stephen, Goodman, Susan M., Tabechian, Darren, Hughes, Laura B., Salomon-Escoto, Karen, Watts, Gerald F. M., Jonsson, Anna H., Rangel-Moreno, Javier, Pellett, Nida M., Rozo, Cristina, Apruzzese, William, Eisenhaure, Thomas M., Lieb, David J., Boyle, David L., Mandelin, Arthur M., Boyce, Brendan F., DiCarlo, Edward, Gravallese, Ellen M., Gregersen, Peter K., Moreland, Larry, Firestein, Gary S., Hacohen, Nir, Nusbaum, Chad, Lederer, James A., Perlman, Harris, Pitzalis, Costantino, Filer, Andrew, Holers, V. Michael, Bykerk, Vivian P., Donlin, Laura T., Anolik, Jennifer H., Brenner, Michael B., Raychaudhuri, Soumya, Albrecht, Jennifer, Bridges, S. Louis, Buckley, Christopher D., Buckner, Jane H., Dolan, James, Guthridge, Joel M., Gutierrez-Arcelus, Maria, Ivashkiv, Lionel B., James, Eddie A., James, Judith A., Keegan, Josh, Lee, Yvonne C., McGeachy, Mandy J., McNamara, Michael A., Mears, Joseph R., Mizoguchi, Fumitaka, Nguyen, Jennifer P., Noma, Akiko, Orange, Dana E., Rohani-Pichavant, Mina, Ritchlin, Christopher, Robinson, William H., Seshadri, Anupamaa, Sutherby, Danielle, Seifert, Jennifer, Turner, Jason D., Utz, Paul J.
Publicado 2019