Integrating systems biology data to yield functional genomics insights

por Fordyce, Polly, Ingolia, Nicholas
Publicado 2011

Eg5 steps it up!

por Valentine, Megan T, Fordyce, Polly M, Block, Steven M
Publicado 2006

Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

por Greenside, Peyton, Shimko, Tyler, Fordyce, Polly, Kundaje, Anshul
Publicado 2018

An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)

por Harink, Björn, Nguyen, Huy, Thorn, Kurt, Fordyce, Polly
Publicado 2019

MRBLE-pep Measurements Reveal Accurate Binding Affinities for B56, a PP2A Regulatory Subunit

por Hein, Jamin B., Cyert, Martha S., Fordyce, Polly M.
Publicado 2021

Combined optical trapping and single-molecule fluorescence

por Lang, Matthew J, Fordyce, Polly M, Block, Steven M
Publicado 2003

Machine learning for microfluidic design and control

por McIntyre, David, Lashkaripour, Ali, Fordyce, Polly, Densmore, Douglas
Publicado 2022

Diversification of DNA binding specificities enabled SREBP transcription regulators to expand the repertoire of cellular functions that they govern in fungi

por del Olmo Toledo, Valentina, Puccinelli, Robert, Fordyce, Polly M., Pérez, J. Christian
Publicado 2018

MRBLES 2.0: High-throughput generation of chemically functionalized spectrally and magnetically encoded hydrogel beads using a simple single-layer microfluidic device

por Feng, Yinnian, White, Adam K., Hein, Jamin B., Appel, Eric A., Fordyce, Polly M.
Publicado 2020

On the dependent recognition of some long zinc finger proteins

por Zuo, Zheng, Billings, Timothy, Walker, Michael, Petkov, Petko M, Fordyce, Polly M, Stormo, Gary D
Publicado 2023

uPIC–M: Efficient and Scalable Preparation of Clonal Single Mutant Libraries for High-Throughput Protein Biochemistry

por Appel, Mason J., Longwell, Scott A., Morri, Maurizio, Neff, Norma, Herschlag, Daniel, Fordyce, Polly M.
Publicado 2021

Double emulsions as a high-throughput enrichment and isolation platform for slower-growing microbes

por McCully, Alexandra L., Loop Yao, McKenna, Brower, Kara K., Fordyce, Polly M., Spormann, Alfred M.
Publicado 2023

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets

por Nelson, Christopher S., Fuller, Chris K., Fordyce, Polly M., Greninger, Alexander L., Li, Hao, DeRisi, Joseph L.
Publicado 2013

De Novo Identification and Biophysical Characterization of Transcription Factor Binding Sites with Microfluidic Affinity Analysis

por Fordyce, Polly M., Gerber, Doron, Tran, Danh, Zheng, Jiashun, Li, Hao, DeRisi, Joseph L., Quake, Stephen R.
Publicado 2010

How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes

por Pérez, J. Christian, Fordyce, Polly M., Lohse, Matthew B., Hanson-Smith, Victor, DeRisi, Joseph L., Johnson, Alexander D.
Publicado 2014

Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding

por Le, Daniel D., Shimko, Tyler C., Aditham, Arjun K., Keys, Allison M., Longwell, Scott A., Orenstein, Yaron, Fordyce, Polly M.
Publicado 2018

High-throughput chromatin accessibility profiling at single-cell resolution

por Mezger, Anja, Klemm, Sandy, Mann, Ishminder, Brower, Kara, Mir, Alain, Bostick, Magnolia, Farmer, Andrew, Fordyce, Polly, Linnarsson, Sten, Greenleaf, William
Publicado 2018

Live imaging of Aiptasia larvae, a model system for coral and anemone bleaching, using a simple microfluidic device

por Van Treuren, Will, Brower, Kara K., Labanieh, Louai, Hunt, Daniel, Lensch, Sarah, Cruz, Bianca, Cartwright, Heather N., Tran, Cawa, Fordyce, Polly M.
Publicado 2019

Double emulsion flow cytometry with high-throughput single droplet isolation and nucleic acid recovery

por Brower, Kara K., Carswell-Crumpton, Catherine, Klemm, Sandy, Cruz, Bianca, Kim, Gaeun, Calhoun, Suzanne G. K., Nichols, Lisa, Fordyce, Polly M.
Publicado 2020

De novo distillation of thermodynamic affinity from deep learning regulatory sequence models of in vivo protein-DNA binding

por Alexandari, Amr M., Horton, Connor A., Shrikumar, Avanti, Shah, Nilay, Li, Eileen, Weilert, Melanie, Pufall, Miles A., Zeitlinger, Julia, Fordyce, Polly M., Kundaje, Anshul
Publicado 2023