Transcription Factor NKX6.3 Sheds Light on Gastric Cancer Progression

por Testa, Alison C., Forrest, Alistair R.R.
Publicado 2016

scMatch: a single-cell gene expression profile annotation tool using reference datasets

por Hou, Rui, Denisenko, Elena, Forrest, Alistair R R
Publicado 2019

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

por Kawaji, Hideya, Kasukawa, Takeya, Forrest, Alistair, Carninci, Piero, Hayashizaki, Yoshihide
Publicado 2017

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

por Hurst, Laurence D., Ghanbarian, Avazeh T., Forrest, Alistair R. R., Huminiecki, Lukasz
Publicado 2015

Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020

por Forrest, Alistair R. R., Repetto, Gabriela M., Reichardt, Juergen K. V.
Publicado 2020

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

por Hurst, Laurence D, Sachenkova, Oxana, Daub, Carsten, Forrest, Alistair RR, Huminiecki, Lukasz
Publicado 2014

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

por Haberle, Vanja, Forrest, Alistair R.R., Hayashizaki, Yoshihide, Carninci, Piero, Lenhard, Boris
Publicado 2015

Predicting cell-to-cell communication networks using NATMI

por Hou, Rui, Denisenko, Elena, Ong, Huan Ting, Ramilowski, Jordan A., Forrest, Alistair R. R.
Publicado 2020

MiR-107 and MiR-185 Can Induce Cell Cycle Arrest in Human Non Small Cell Lung Cancer Cell Lines

por Takahashi, Yukari, Forrest, Alistair R. R., Maeno, Emi, Hashimoto, Takehiro, Daub, Carsten O., Yasuda, Jun
Publicado 2009

Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis

por Tomaru, Yasuhiro, Simon, Christophe, Forrest, Alistair RR, Miura, Hisashi, Kubosaki, Atsutaka, Hayashizaki, Yoshihide, Suzuki, Masanori
Publicado 2009

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

por Hasegawa, Yuki, Tang, Dave, Takahashi, Naoko, Hayashizaki, Yoshihide, Forrest, Alistair R. R., the FANTOM consortium, Suzuki, Harukazu
Publicado 2014

CORRIGENDUM: CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

por Hasegawa, Yuki, Tang, Dave, Takahashi, Naoko, Hayashizaki, Yoshihide, Forrest, Alistair R. R., the FANTOM consortium, Suzuki, Harukazu
Publicado 2014

Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease

por Carrieri, Claudia, Forrest, Alistair R. R., Santoro, Claudio, Persichetti, Francesca, Carninci, Piero, Zucchelli, Silvia, Gustincich, Stefano
Publicado 2015

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

por Arenillas, David J., Forrest, Alistair R. R., Kawaji, Hideya, Lassmann, Timo, Wasserman, Wyeth W., Mathelier, Anthony
Publicado 2016

Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel

por Goullée, Hayley, Taylor, Rhonda L., Forrest, Alistair R. R., Laing, Nigel G., Ravenscroft, Gianina, Clayton, Joshua S.
Publicado 2021

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

por Rye, Morten, Sandve, Geir Kjetil, Daub, Carsten O, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair RR, Drabløs, Finn
Publicado 2014

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

por Ohmiya, Hiroko, Vitezic, Morana, Frith, Martin C, Itoh, Masayoshi, Carninci, Piero, Forrest, Alistair RR, Hayashizaki, Yoshihide, Lassmann, Timo
Publicado 2014

CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes

por Bayati, Masroor, Rabiee, Hamid R., Mehrbod, Mehrdad, Vafaee, Fatemeh, Ebrahimi, Diako, Forrest, Alistair R. R., Alinejad-Rokny, Hamid
Publicado 2020

The Evolution of Human Cells in Terms of Protein Innovation

por Sardar, Adam J., Oates, Matt E., Fang, Hai, Forrest, Alistair R.R., Kawaji, Hideya, Gough, Julian, Rackham, Owen J.L.
Publicado 2014

MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments

por Alinejad-Rokny, Hamid, Ghavami Modegh, Rassa, Rabiee, Hamid R., Ramezani Sarbandi, Ehsan, Rezaie, Narges, Tam, Kin Tung, Forrest, Alistair R. R.
Publicado 2022