Unbiased Taxonomic Annotation of Metagenomic Samples

by Fosso, Bruno, Pesole, Graziano, Rosselló, Francesc, Valiente, Gabriel
Published 2018

Stem Cell Impairment at the Host-Microbiota Interface in Colorectal Cancer

by Marzano, Marinella, Fosso, Bruno, Piancone, Elisabetta, Defazio, Giuseppe, Pesole, Graziano, De Robertis, Mariangela
Published 2021

The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health

by Stabili, Loredana, Rizzo, Lucia, Basso, Lorena, Marzano, Marinella, Fosso, Bruno, Pesole, Graziano, Piraino, Stefano
Published 2020

Accurate quantification of bacterial abundance in metagenomic DNAs accounting for variable DNA integrity levels

by Manzari, Caterina, Oranger, Annarita, Fosso, Bruno, Piancone, Elisabetta, Pesole, Graziano, D’Erchia, Anna Maria
Published 2020

Amplicon-Based Microbiome Profiling: From Second- to Third-Generation Sequencing for Higher Taxonomic Resolution

by Notario, Elisabetta, Visci, Grazia, Fosso, Bruno, Gissi, Carmela, Tanaskovic, Nina, Rescigno, Maria, Marzano, Marinella, Pesole, Graziano
Published 2023

Functional Integration of mRNA Translational Control Programs

by MacNicol, Melanie C., Cragle, Chad E., Arumugam, Karthik, Fosso, Bruno, Pesole, Graziano, MacNicol, Angus M.
Published 2015

Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7(−/−) mice

by Perruzza, Lisa, Strati, Francesco, Gargari, Giorgio, D’Erchia, Anna Maria, Fosso, Bruno, Pesole, Graziano, Guglielmetti, Simone, Grassi, Fabio
Published 2019

Machine Learning Data Analysis Highlights the Role of Parasutterella and Alloprevotella in Autism Spectrum Disorders

by Pietrucci, Daniele, Teofani, Adelaide, Milanesi, Marco, Fosso, Bruno, Putignani, Lorenza, Messina, Francesco, Pesole, Graziano, Desideri, Alessandro, Chillemi, Giovanni
Published 2022

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS

by Fosso, Bruno, Santamaria, Monica, Marzano, Marinella, Alonso-Alemany, Daniel, Valiente, Gabriel, Donvito, Giacinto, Monaco, Alfonso, Notarangelo, Pasquale, Pesole, Graziano
Published 2015

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

by Santamaria, Monica, Fosso, Bruno, Licciulli, Flavio, Balech, Bachir, Larini, Ilaria, Grillo, Giorgio, De Caro, Giorgio, Liuni, Sabino, Pesole, Graziano
Published 2018

Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma

by Silvestris, Domenico Alessandro, Picardi, Ernesto, Cesarini, Valeriana, Fosso, Bruno, Mangraviti, Nicolò, Massimi, Luca, Martini, Maurizio, Pesole, Graziano, Locatelli, Franco, Gallo, Angela
Published 2019

Human Endometrial Microbiota at Term of Normal Pregnancies

by Leoni, Claudia, Ceci, Oronzo, Manzari, Caterina, Fosso, Bruno, Volpicella, Mariateresa, Ferrari, Alessandra, Fiorella, Paola, Pesole, Graziano, Cicinelli, Ettore, Ceci, Luigi Ruggiero
Published 2019

ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy

by Tangaro, Marco A, Defazio, Giuseppe, Fosso, Bruno, Licciulli, Vito Flavio, Grillo, Giorgio, Donvito, Giacinto, Lavezzo, Enrico, Baruzzo, Giacomo, Pesole, Graziano, Santamaria, Monica
Published 2021

Lactobacillus rossiae, a Vitamin B(12) Producer, Represents a Metabolically Versatile Species within the Genus Lactobacillus

by De Angelis, Maria, Bottacini, Francesca, Fosso, Bruno, Kelleher, Philip, Calasso, Maria, Di Cagno, Raffaella, Ventura, Marco, Picardi, Ernesto, van Sinderen, Douwe, Gobbetti, Marco
Published 2014

A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy)

by Leoni, Claudia, Volpicella, Mariateresa, Fosso, Bruno, Manzari, Caterina, Piancone, Elisabetta, Dileo, Maria C. G., Arcadi, Erika, Yakimov, Michail, Pesole, Graziano, Ceci, Luigi R.
Published 2020

A primer on machine learning techniques for genomic applications

by Monaco, Alfonso, Pantaleo, Ester, Amoroso, Nicola, Lacalamita, Antonio, Lo Giudice, Claudio, Fonzino, Adriano, Fosso, Bruno, Picardi, Ernesto, Tangaro, Sabina, Pesole, Graziano, Bellotti, Roberto
Published 2021

Microbiome composition indicate dysbiosis and lower richness in tumor breast tissues compared to healthy adjacent paired tissue, within the same women

by Esposito, Maria Valeria, Fosso, Bruno, Nunziato, Marcella, Casaburi, Giorgio, D’Argenio, Valeria, Calabrese, Alessandra, D’Aiuto, Massimiliano, Botti, Gerardo, Pesole, Graziano, Salvatore, Francesco
Published 2022

Comparative Fecal Microbiota Analysis of Infants With Acute Bronchiolitis Caused or Not Caused by Respiratory Syncytial Virus

by De Maio, Flavio, Buonsenso, Danilo, Bianco, Delia Mercedes, Giaimo, Martina, Fosso, Bruno, Monzo, Francesca Romana, Sali, Michela, Posteraro, Brunella, Valentini, Piero, Sanguinetti, Maurizio
Published 2022

Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease

by Annese, Anita, Manzari, Caterina, Lionetti, Claudia, Picardi, Ernesto, Horner, David S., Chiara, Matteo, Caratozzolo, Mariano Francesco, Tullo, Apollonia, Fosso, Bruno, Pesole, Graziano, D’Erchia, Anna Maria
Published 2018

Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis

by Oranger, Annarita, Manzari, Caterina, Chiara, Matteo, Notario, Elisabetta, Fosso, Bruno, Parisi, Antonio, Bianco, Angelica, Iacobellis, Michela, d’Avenia, Morena, D’Erchia, Anna Maria, Pesole, Graziano
Published 2021