TermGenie – a web-application for pattern-based ontology class generation

por Dietze, Heiko, Berardini, Tanya Z, Foulger, Rebecca E, Hill, David P, Lomax, Jane, Osumi-Sutherland, David, Roncaglia, Paola, Mungall, Christopher J
Publicado 2014

An Integrated Ontology Resource to Explore and Study Host-Virus Relationships

por Masson, Patrick, Hulo, Chantal, de Castro, Edouard, Foulger, Rebecca, Poux, Sylvain, Bridge, Alan, Lomax, Jane, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2014

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments

por Roncaglia, Paola, Martone, Maryann E, Hill, David P, Berardini, Tanya Z, Foulger, Rebecca E, Imam, Fahim T, Drabkin, Harold, Mungall, Christopher J, Lomax, Jane
Publicado 2013

The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection

por Hulo, Chantal, Masson, Patrick, de Castro, Edouard, Auchincloss, Andrea H., Foulger, Rebecca, Poux, Sylvain, Lomax, Jane, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2017

Representing Kidney Development Using the Gene Ontology

por Alam-Faruque, Yasmin, Hill, David P., Dimmer, Emily C., Harris, Midori A., Foulger, Rebecca E., Tweedie, Susan, Attrill, Helen, Howe, Douglas G., Thomas, Stephen Randall, Davidson, Duncan, Woolf, Adrian S., Blake, Judith A., Mungall, Christopher J., O’Donovan, Claire, Apweiler, Rolf, Huntley, Rachael P.
Publicado 2014

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology

por Hill, David P, Adams, Nico, Bada, Mike, Batchelor, Colin, Berardini, Tanya Z, Dietze, Heiko, Drabkin, Harold J, Ennis, Marcus, Foulger, Rebecca E, Harris, Midori A, Hastings, Janna, Kale, Namrata S, de Matos, Paula, Mungall, Christopher J, Owen, Gareth, Roncaglia, Paola, Steinbeck, Christoph, Turner, Steve, Lomax, Jane
Publicado 2013

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

por Huntley, Rachael P, Harris, Midori A, Alam-Faruque, Yasmin, Blake, Judith A, Carbon, Seth, Dietze, Heiko, Dimmer, Emily C, Foulger, Rebecca E, Hill, David P, Khodiyar, Varsha K, Lock, Antonia, Lomax, Jane, Lovering, Ruth C, Mutowo-Meullenet, Prudence, Sawford, Tony, Van Auken, Kimberly, Wood, Valerie, Mungall, Christopher J
Publicado 2014

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology

por Lovering, Ruth C., Roncaglia, Paola, Howe, Douglas G., Laulederkind, Stanley J.F., Khodiyar, Varsha K., Berardini, Tanya Z., Tweedie, Susan, Foulger, Rebecca E., Osumi-Sutherland, David, Campbell, Nancy H., Huntley, Rachael P., Talmud, Philippa J., Blake, Judith A., Breckenridge, Ross, Riley, Paul R., Lambiase, Pier D., Elliott, Perry M., Clapp, Lucie, Tinker, Andrew, Hill, David P.
Publicado 2018

The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources

por DiStefano, Marina T., Goehringer, Scott, Babb, Lawrence, Alkuraya, Fowzan S., Amberger, Joanna, Amin, Mutaz, Austin-Tse, Christina, Balzotti, Marie, Berg, Jonathan S., Birney, Ewan, Bocchini, Carol, Bruford, Elspeth A., Coffey, Alison J., Collins, Heather, Cunningham, Fiona, Daugherty, Louise C., Einhorn, Yaron, Firth, Helen V., Fitzpatrick, David R., Foulger, Rebecca E., Goldstein, Jennifer, Hamosh, Ada, Hurles, Matthew R., Leigh, Sarah E., Leong, Ivone US., Maddirevula, Sateesh, Martin, Christa L., McDonagh, Ellen M., Olry, Annie, Puzriakova, Arina, Radtke, Kelly, Ramos, Erin M., Rath, Ana, Riggs, Erin Rooney, Roberts, Angharad M., Rodwell, Charlotte, Snow, Catherine, Stark, Zornitza, Tahiliani, Jackie, Tweedie, Susan, Ware, James S., Weller, Phillip, Williams, Eleanor, Wright, Caroline F., Yates, T Michael., Rehm, Heidi L.
Publicado 2022

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

por Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Publicado 2016