Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences

por Fouts, Derrick E.
Publicado 2006

Next generation sequencing technologies and the changing landscape of phage genomics

por Klumpp, Jochen, Fouts, Derrick E., Sozhamannan, Shanmuga
Publicado 2012

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

por Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J., Klumpp, Jochen
Publicado 2015

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

por Fouts, Derrick E., Brinkac, Lauren, Beck, Erin, Inman, Jason, Sutton, Granger
Publicado 2012

Leptospiral Pathogenomics

por Lehmann, Jason S., Matthias, Michael A., Vinetz, Joseph M., Fouts, Derrick E.
Publicado 2014

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models

por Clarke, Thomas H, Brinkac, Lauren M, Sutton, Granger, Fouts, Derrick E
Publicado 2018

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is...

por Sutton, Granger G., Brinkac, Lauren M., Clarke, Thomas H., Fouts, Derrick E.
Publicado 2018

Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii Strains

por Klumpp, Jochen, Staubli, Titu, Schmitter, Sibylle, Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J.
Publicado 2014

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

por Clarke, Thomas H., Brinkac, Lauren M., Inman, Jason M., Sutton, Granger, Fouts, Derrick E.
Publicado 2018

OMeta: an ontology-based, data-driven metadata tracking system

por Singh, Indresh, Kuscuoglu, Mehmet, Harkins, Derek M., Sutton, Granger, Fouts, Derrick E., Nelson, Karen E.
Publicado 2019

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

por Lang, Sonja, Fairfied, Bradley, Gao, Bei, Duan, Yi, Zhang, Xinlian, Fouts, Derrick E., Schnabl, Bernd
Publicado 2020

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

por McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A
Publicado 2014

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

por Brinkac, Lauren M., White, Richard, D’Souza, Roshan, Nguyen, Kevin, Obaro, Stephen K., Fouts, Derrick E.
Publicado 2019

Large-scale comparative analysis of microbial pan-genomes using PanOCT

por Inman, Jason M, Sutton, Granger G, Beck, Erin, Brinkac, Lauren M, Clarke, Thomas H, Fouts, Derrick E
Publicado 2019

Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

por Chen, Yuansha, Stine, O Colin, Badger, Jonathan H, Gil, Ana I, Nair, G Balakrish, Nishibuchi, Mitsuaki, Fouts, Derrick E
Publicado 2011

Sequencing viral genomes from a single isolated plaque

por DePew, Jessica, Zhou, Bin, McCorrison, Jamison M, Wentworth, David E, Purushe, Janaki, Koroleva, Galina, Fouts, Derrick E
Publicado 2013

Structural proteins of Enterococcus faecalis bacteriophage ϕEf11

por Stevens, Roy H., Zhang, Hongming, Hsiao, Chaiwing, Kachlany, Scott, Tinoco, Eduardo M. B., DePew, Jessica, Fouts, Derrick E.
Publicado 2016

Genomic and clinical characterisation of multidrug-resistant carbapenemase-producing ST231 and ST16 Klebsiella pneumoniae isolates colonising patients at Siriraj hospital, Bangkok,...

por Boonyasiri, Adhiratha, Jauneikaite, Elita, Brinkac, Lauren M., Greco, Chris, Lerdlamyong, Kanokorn, Tangkoskul, Teerawit, Nguyen, Kevin, Thamlikitkul, Visanu, Fouts, Derrick E.
Publicado 2021

Intestinal virome in patients with alcohol use disorder and after abstinence

por Hsu, Cynthia L., Zhang, Xinlian, Jiang, Lu, Lang, Sonja, Hartmann, Phillipp, Pride, David, Fouts, Derrick E., Stärkel, Peter, Schnabl, Bernd
Publicado 2022

Complete Genome Sequence of Staphylococcus aureus Phage SA75, Isolated from Goat Feces

por D’Souza, Roshan, White, Richard C., Buzzeo, Rachel, Goglin, Karrie, Vashee, Sanjay, Lee, Yoona, Son, Bokyung, Ryu, Sangryeol, Fouts, Derrick E.
Publicado 2020