The Breast Cancer Single-Cell Atlas: Defining cellular heterogeneity within model cell lines and primary tumors to inform disease subtype, stemness, and treatment options

por Dave, Arpit, Charytonowicz, Daniel, Francoeur, Nancy J., Beaumont, Michael, Beaumont, Kristin, Schmidt, Hank, Zeleke, Tizita, Silva, Jose, Sebra, Robert
Publicado 2023

Analysis of Multiple Sarcoma Expression Datasets: Implications for Classification, Oncogenic Pathway Activation and Chemotherapy Resistance

por Konstantinopoulos, Panagiotis A., Fountzilas, Elena, Goldsmith, Jeffrey D., Bhasin, Manoj, Pillay, Kamana, Francoeur, Nancy, Libermann, Towia A., Gebhardt, Mark C., Spentzos, Dimitrios
Publicado 2010

Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment

por Estill, Molly, Ribeiro, Efrain, Francoeur, Nancy J., Smith, Melissa L., Sebra, Robert, Yeh, Szu-Ying, Cunningham, Ashley M., Nestler, Eric J., Shen, Li
Publicado 2021

LINE-1 promotes tumorigenicity and exacerbates tumor progression via stimulating metabolism reprogramming in non-small cell lung cancer

por Sun, Zeguo, Zhang, Rui, Zhang, Xiao, Sun, Yifei, Liu, Pengpeng, Francoeur, Nancy, Han, Lei, Lam, Wan Yee, Yi, Zhengzi, Sebra, Robert, Walsh, Martin, Yu, Jinpu, Zhang, Weijia
Publicado 2022

A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study

por Fountzilas, Elena, Kelly, Andrew D, Perez-Atayde, Antonio R, Goldsmith, Jeffrey, Konstantinopoulos, Panagiotis A, Francoeur, Nancy, Correll, Mick, Rubio, Renee, Hu, Lan, Gebhardt, Mark C, Quackenbush, John, Spentzos, Dimitrios
Publicado 2012

Identification of Alternative Polyadenylation in Cyanidioschyzon merolae Through Long-Read Sequencing of mRNA

por Schärfen, Leonard, Zigackova, Dagmar, Reimer, Kirsten A., Stark, Martha R., Slat, Viktor A., Francoeur, Nancy J., Wells, Melissa L., Zhou, Lecong, Blackshear, Perry J., Neugebauer, Karla M., Rader, Stephen D.
Publicado 2022

Molecular Profiling of Coronavirus Disease 2019 (COVID-19) Autopsies Uncovers Novel Disease Mechanisms

por Pujadas, Elisabet, Beaumont, Michael, Shah, Hardik, Schrode, Nadine, Francoeur, Nancy, Shroff, Sanjana, Bryce, Clare, Grimes, Zachary, Gregory, Jill, Donnelly, Ryan, Fowkes, Mary E., Beaumont, Kristin G., Sebra, Robert, Cordon-Cardo, Carlos
Publicado 2021

MicroRNA paraffin-based studies in osteosarcoma reveal reproducible independent prognostic profiles at 14q32

por Kelly, Andrew D, Haibe-Kains, Benjamin, Janeway, Katherine A, Hill, Katherine E, Howe, Eleanor, Goldsmith, Jeffrey, Kurek, Kyle, Perez-Atayde, Antonio R, Francoeur, Nancy, Fan, Jian-Bing, April, Craig, Schneider, Hal, Gebhardt, Mark C, Culhane, Aedin, Quackenbush, John, Spentzos, Dimitrios
Publicado 2013

Neuronal impact of patient-specific aberrant NRXN1α splicing

por Flaherty, Erin, Zhu, Shijia, Barretto, Natalie, Cheng, Esther, Deans, Michael Peter, Fernando, Michael, Schrode, Nadine, Francoeur, Nancy, Antoine, Alesia, Alganem, Khaled, Halpern, Madeline, Deikus, Gintaras, Shah, Hardik, Fitzgerald, Megan, Ladran, Ian, Gochman, Peter, Rapoport, Judith, Tsankova, Nadejda, Mccullumsmith, Robert, Hoffman, Gabriel E., Sebra, Robert, Fang, Gang, Brennand, Kristen J.
Publicado 2019

Staphylococcus aureus induces an itaconate-dominated immunometabolic response that drives biofilm formation

por Tomlinson, Kira L., Lung, Tania Wong Fok, Dach, Felix, Annavajhala, Medini K., Gabryszewski, Stanislaw J., Groves, Ryan A., Drikic, Marija, Francoeur, Nancy J., Sridhar, Shwetha H., Smith, Melissa L., Khanal, Sara, Britto, Clemente J., Sebra, Robert, Lewis, Ian, Uhlemann, Anne-Catrin, Kahl, Barbara C., Prince, Alice S., Riquelme, Sebastián A.
Publicado 2021

Isoform-resolved transcriptome of the human preimplantation embryo

por Torre, Denis, Francoeur, Nancy J., Kalma, Yael, Gross Carmel, Ilana, Melo, Betsaida S., Deikus, Gintaras, Allette, Kimaada, Flohr, Ron, Fridrikh, Maya, Vlachos, Konstantinos, Madrid, Kent, Shah, Hardik, Wang, Ying-Chih, Sridhar, Shwetha H., Smith, Melissa L., Eliyahu, Efrat, Azem, Foad, Amir, Hadar, Mayshar, Yoav, Marazzi, Ivan, Guccione, Ernesto, Schadt, Eric, Ben-Yosef, Dalit, Sebra, Robert
Publicado 2023

Tissue-based SARS-CoV-2 detection in fatal COVID-19 infections: Sustained direct viral-induced damage is not necessary to drive disease progression()

por El Jamal, Siraj M., Pujadas, Elisabet, Ramos, Irene, Bryce, Clare, Grimes, Zachary M., Amanat, Fatima, Tsankova, Nadejda M., Mussa, Zarmeen, Olson, Sara, Salem, Fadi, Miorin, Lisa, Aydillo, Teresa, Schotsaert, Michael, Albrecht, Randy A., Liu, Wen-Chun, Marjanovic, Nada, Francoeur, Nancy, Sebra, Robert, Sealfon, Stuart C., García-Sastre, Adolfo, Fowkes, Mary, Cordon-Cardo, Carlos, Westra, William H.
Publicado 2021

Cell-specific histone modification maps link schizophrenia risk to the neuronal epigenome

por Girdhar, Kiran, Hoffman, Gabriel E., Jiang, Yan, Brown, Leanne, Kundakovic, Marija, Hauberg, Mads E., Francoeur, Nancy J., Wang, Ying-chih, Shah, Hardik, Kavanagh, David H., Zharovsky, Elizabeth, Jacobov, Rivka, Wiseman, Jennifer R., Park, Royce, Johnson, Jessica S., Kassim, Bibi S., Sloofman, Laura, Mattei, Eugenio, Weng, Zhiping, Sieberts, Solveig K., Peters, Mette A., Harris, Brent T., Lipska, Barbara K., Sklar, Pamela, Roussos, Panos, Akbarian, Schahram
Publicado 2018

Bat pluripotent stem cells reveal unusual entanglement between host and viruses

por Déjosez, Marion, Marin, Arturo, Hughes, Graham M., Morales, Ariadna E., Godoy-Parejo, Carlos, Gray, Jonathan L., Qin, Yiren, Singh, Arun A., Xu, Hui, Juste, Javier, Ibáñez, Carlos, White, Kris M., Rosales, Romel, Francoeur, Nancy J., Sebra, Robert P., Alcock, Dominic, Volkert, Thomas L., Puechmaille, Sébastien J., Pastusiak, Andrzej, Frost, Simon D.W., Hiller, Michael, Young, Richard A., Teeling, Emma C., García-Sastre, Adolfo, Zwaka, Thomas P.
Publicado 2023

Introductions and early spread of SARS-CoV-2 in the New York City area

por Gonzalez-Reiche, Ana S., Hernandez, Matthew M., Sullivan, Mitchell J., Ciferri, Brianne, Alshammary, Hala, Obla, Ajay, Fabre, Shelcie, Kleiner, Giulio, Polanco, Jose, Khan, Zenab, Alburquerque, Bremy, van de Guchte, Adriana, Dutta, Jayeeta, Francoeur, Nancy, Melo, Betsaida Salom, Oussenko, Irina, Deikus, Gintaras, Soto, Juan, Sridhar, Shwetha Hara, Wang, Ying-Chih, Twyman, Kathryn, Kasarskis, Andrew, Altman, Deena R., Smith, Melissa, Sebra, Robert, Aberg, Judith, Krammer, Florian, García-Sastre, Adolfo, Luksza, Marta, Patel, Gopi, Paniz-Mondolfi, Alberto, Gitman, Melissa, Sordillo, Emilia Mia, Simon, Viviana, van Bakel, Harm
Publicado 2020

Acute COVID-19 gene-expression profiles show multiple etiologies of long-term sequelae

por Thompson, Ryan C., Simons, Nicole W., Wilkins, Lillian, Cheng, Esther, Del Valle, Diane Marie, Hoffman, Gabriel E., Fennessy, Brian, Mouskas, Konstantinos, Francoeur, Nancy J., Johnson, Jessica S., Lepow, Lauren, Le Berichel, Jessica, Chang, Christie, Beckmann, Aviva G., Wang, Ying-chih, Nie, Kai, Zaki, Nicholas, Tuballes, Kevin, Barcessat, Vanessa, Cedillo, Mario A., Huckins, Laura, Roussos, Panagiotis, Marron, Thomas U., Glicksberg, Benjamin S., Nadkarni, Girish, Gonzalez-Kozlova, Edgar, Kim-Schulze, Seunghee, Sebra, Robert, Merad, Miriam, Gnjatic, Sacha, Schadt, Eric E., Charney, Alexander W., Beckmann, Noam D.
Publicado 2021

Molecular states during acute COVID-19 reveal distinct etiologies of long-term sequelae

por Thompson, Ryan C., Simons, Nicole W., Wilkins, Lillian, Cheng, Esther, Del Valle, Diane Marie, Hoffman, Gabriel E., Cervia, Carlo, Fennessy, Brian, Mouskas, Konstantinos, Francoeur, Nancy J., Johnson, Jessica S., Lepow, Lauren, Le Berichel, Jessica, Chang, Christie, Beckmann, Aviva G., Wang, Ying-chih, Nie, Kai, Zaki, Nicholas, Tuballes, Kevin, Barcessat, Vanessa, Cedillo, Mario A., Yuan, Dan, Huckins, Laura, Roussos, Panos, Marron, Thomas U., Glicksberg, Benjamin S., Nadkarni, Girish, Heath, James R., Gonzalez-Kozlova, Edgar, Boyman, Onur, Kim-Schulze, Seunghee, Sebra, Robert, Merad, Miriam, Gnjatic, Sacha, Schadt, Eric E., Charney, Alexander W., Beckmann, Noam D.
Publicado 2022

Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege

por Charney, Alexander W., Simons, Nicole W., Mouskas, Konstantinos, Lepow, Lauren, Cheng, Esther, Le Berichel, Jessica, Chang, Christie, Marvin, Robert, Del Valle, Diane Marie, Calorossi, Sharlene, Lansky, Alona, Walker, Laura, Patel, Manishkumar, Xie, Hui, Yi, Nancy, Yu, Alex, Kang, Gurpawan, Liharska, Lora E., Moya, Emily, Hartnett, Matthew, Hatem, Sandra, Wilkins, Lillian, Eaton, Melody, Jamal, Hajra, Tuballes, Kevin, Chen, Steven T., Chung, Jonathan, Harris, Jocelyn, Batchelor, Craig, Lacunza, Jose, Yishak, Mahlet, Argueta, Kimberly, Karekar, Neha, Lee, Brian, Kelly, Geoffrey, Geanon, Daniel, Handler, Diana, Leech, John, Stefanos, Hiyab, Dawson, Travis, Scott, Ieisha, Francoeur, Nancy, Johnson, Jessica S., Vaid, Akhil, Glicksberg, Benjamin S., Nadkarni, Girish N., Schadt, Eric E., Gelb, Bruce D., Rahman, Adeeb, Sebra, Robert, Martin, Glenn, Marron, Thomas, Beckmann, Noam, Kim-Schulze, Seunghee, Gnjatic, Sacha, Merad, Miriam
Publicado 2020

Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege

por Charney, Alexander W., Simons, Nicole W., Mouskas, Konstantinos, Lepow, Lauren, Cheng, Esther, Le Berichel, Jessica, Chang, Christie, Marvin, Robert, Del Valle, Diane Marie, Calorossi, Sharlene, Lansky, Alona, Walker, Laura, Patel, Manishkumar, Xie, Hui, Yi, Nancy, Yu, Alex, Kang, Gurpawan, Mendoza, Anthony, Liharska, Lora E., Moya, Emily, Hartnett, Matthew, Hatem, Sandra, Wilkins, Lillian, Eaton, Melody, Jamal, Hajra, Tuballes, Kevin, Chen, Steven T., Tabachnikova, Alexandra, Chung, Jonathan, Harris, Jocelyn, Batchelor, Craig, Lacunza, Jose, Yishak, Mahlet, Argueta, Kimberly, Karekar, Neha, Lee, Brian, Kelly, Geoffrey, Geanon, Daniel, Handler, Diana, Leech, John, Stefanos, Hiyab, Dawson, Travis, Scott, Ieisha, Francoeur, Nancy, Johnson, Jessica S., Vaid, Akhil, Glicksberg, Benjamin S., Nadkarni, Girish N., Schadt, Eric E., Gelb, Bruce D., Rahman, Adeeb, Sebra, Robert, Martin, Glenn, Marron, Thomas, Beckmann, Noam, Kim-Schulze, Seunghee, Gnjatic, Sacha, Merad, Miriam
Publicado 2021

Cytotoxic lymphocytes are dysregulated in multisystem inflammatory syndrome in children

por Beckmann, Noam D., Comella, Phillip H., Cheng, Esther, Lepow, Lauren, Beckmann, Aviva G., Mouskas, Konstantinos, Simons, Nicole W., Hoffman, Gabriel E., Francoeur, Nancy J., Del Valle, Diane Marie, Kang, Gurpawan, Moya, Emily, Wilkins, Lillian, Le Berichel, Jessica, Chang, Christie, Marvin, Robert, Calorossi, Sharlene, Lansky, Alona, Walker, Laura, Yi, Nancy, Yu, Alex, Hartnett, Matthew, Eaton, Melody, Hatem, Sandra, Jamal, Hajra, Akyatan, Alara, Tabachnikova, Alexandra, Liharska, Lora E., Cotter, Liam, Fennessey, Brian, Vaid, Akhil, Barturen, Guillermo, Tyler, Scott R., Shah, Hardik, Wang, Ying-chih, Sridhar, Shwetha Hara, Soto, Juan, Bose, Swaroop, Madrid, Kent, Ellis, Ethan, Merzier, Elyze, Vlachos, Konstantinos, Fishman, Nataly, Tin, Manying, Smith, Melissa, Xie, Hui, Patel, Manishkumar, Argueta, Kimberly, Harris, Jocelyn, Karekar, Neha, Batchelor, Craig, Lacunza, Jose, Yishak, Mahlet, Tuballes, Kevin, Scott, Leisha, Kumar, Arvind, Jaladanki, Suraj, Thompson, Ryan, Clark, Evan, Losic, Bojan, Zhu, Jun, Wang, Wenhui, Kasarskis, Andrew, Glicksberg, Benjamin S., Nadkarni, Girish, Bogunovic, Dusan, Elaiho, Cordelia, Gangadharan, Sandeep, Ofori-Amanfo, George, Alesso-Carra, Kasey, Onel, Kenan, Wilson, Karen M., Argmann, Carmen, Alarcón-Riquelme, Marta E., Marron, Thomas U., Rahman, Adeeb, Kim-Schulze, Seunghee, Gnjatic, Sacha, Gelb, Bruce D., Merad, Miriam, Sebra, Robert, Schadt, Eric E., Charney, Alexander W.
Publicado 2020