Idéfix: identifying accidental sample mix-ups in biobanks using polygenic scores

por Warmerdam, Robert, Lanting, Pauline, Deelen, Patrick, Franke, Lude
Publicado 2021

No Evidence in a Large UK Collection for Celiac Disease Risk Variants Reported by a Spanish Study

por Hunt, Karen A., Franke, Lude, Deloukas, Panos, Wijmenga, Cisca, van Heel, David A.
Publicado 2008

Semi-automatic translation of medicine usage data (in Dutch, free-text) from Lifelines COVID-19 questionnaires to ATC codes

por Kellmann, Alexander J, Lanting, Pauline, Franke, Lude, van Enckevort, Esther J, Swertz, Morris A
Publicado 2023

Ciliary Genes Are Down-Regulated in Bronchial Tissue of Primary Ciliary Dyskinesia Patients

por Geremek, Maciej, Ziętkiewicz, Ewa, Bruinenberg, Marcel, Franke, Lude, Pogorzelski, Andrzej, Wijmenga, Cisca, Witt, Michał
Publicado 2014

Gene co-expression analysis for functional classification and gene–disease predictions

por van Dam, Sipko, Võsa, Urmo, van der Graaf, Adriaan, Franke, Lude, de Magalhães, João Pedro
Publicado 2017

Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics

por Giambartolomei, Claudia, Vukcevic, Damjan, Schadt, Eric E., Franke, Lude, Hingorani, Aroon D., Wallace, Chris, Plagnol, Vincent
Publicado 2014

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

por Kogelman, Lisette J A, Cirera, Susanna, Zhernakova, Daria V, Fredholm, Merete, Franke, Lude, Kadarmideen, Haja N
Publicado 2014

The landscape of chromosomal aberrations in breast cancer mouse models reveals driver-specific routes to tumorigenesis

por Ben-David, Uri, Ha, Gavin, Khadka, Prasidda, Jin, Xin, Wong, Bang, Franke, Lude, Golub, Todd R.
Publicado 2016

An integrative approach for building personalized gene regulatory networks for precision medicine

por van der Wijst, Monique G. P., de Vries, Dylan H., Brugge, Harm, Westra, Harm-Jan, Franke, Lude
Publicado 2018

Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals

por Kogelman, Lisette J. A., Fu, Jingyuan, Franke, Lude, Greve, Jan Willem, Hofker, Marten, Rensen, Sander S., Kadarmideen, Haja N.
Publicado 2016

An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

por Kogelman, Lisette J. A., Zhernakova, Daria V., Westra, Harm-Jan, Cirera, Susanna, Fredholm, Merete, Franke, Lude, Kadarmideen, Haja N.
Publicado 2015

Single-cell RNA sequencing identifies cell type-specific cis-eQTLs and co-expression QTLs

por van der Wijst, Monique G.P., Brugge, Harm, de Vries, Dylan H., Deelen, Patrick, Swertz, Morris A., Franke, Lude
Publicado 2018

Integration of Candida albicans-induced single-cell gene expression data and secretory protein concentrations reveal genetic regulators of inflammation

por Boahen, Collins K., Oelen, Roy, Le, Kieu, Netea, Mihai G., Franke, Lude, van der Wijst, Monique G.P., Kumar, Vinod
Publicado 2023

Correction for both common and rare cell types in blood is important to identify genes that correlate with age

por Pellegrino-Coppola, Damiano, Claringbould, Annique, Stutvoet, Maartje, Boomsma, Dorret I., Ikram, M. Arfan, Slagboom, P. Eline, Westra, Harm-Jan, Franke, Lude
Publicado 2021

Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration

por Deelen, Patrick, Bonder, Marc Jan, van der Velde, K Joeri, Westra, Harm-Jan, Winder, Erwin, Hendriksen, Dennis, Franke, Lude, Swertz, Morris A
Publicado 2014

Limited evidence for blood eQTLs in human sexual dimorphism

por Porcu, Eleonora, Claringbould, Annique, Weihs, Antoine, Lepik, Kaido, Richardson, Tom G., Völker, Uwe, Santoni, Federico A., Teumer, Alexander, Franke, Lude, Reymond, Alexandre, Kutalik, Zoltán
Publicado 2022

OTTERS: a powerful TWAS framework leveraging summary-level reference data

por Dai, Qile, Zhou, Geyu, Zhao, Hongyu, Võsa, Urmo, Franke, Lude, Battle, Alexis, Teumer, Alexander, Lehtimäki, Terho, Raitakari, Olli T., Esko, Tõnu, Epstein, Michael P., Yang, Jingjing
Publicado 2023

Evaluation of European coeliac disease risk variants in a north Indian population

por Senapati, Sabyasachi, Gutierrez-Achury, Javier, Sood, Ajit, Midha, Vandana, Szperl, Agata, Romanos, Jihane, Zhernakova, Alexandra, Franke, Lude, Alonso, Santos, Thelma, B K, Wijmenga, Cisca, Trynka, Gosia
Publicado 2015

Genetic variants alter T-bet binding and gene expression in mucosal inflammatory disease

por Soderquest, Katrina, Hertweck, Arnulf, Giambartolomei, Claudia, Henderson, Stephen, Mohamed, Rami, Goldberg, Rimma, Perucha, Esperanza, Franke, Lude, Herrero, Javier, Plagnol, Vincent, Jenner, Richard G., Lord, Graham M.
Publicado 2017

Predicted efficacy of a pharmacogenetic passport for inflammatory bowel disease

por Bangma, Amber, Voskuil, Michiel D., Uniken Venema, Werna T. C., Brugge, Harm, Hu, Shixian, Lanting, Pauline, Franke, Lude, Dijkstra, Gerard, Festen, Eleonora A. M., Weersma, Rinse K.
Publicado 2020