Quantifying the mechanisms of domain gain in animal proteins

por Buljan, Marija, Frankish, Adam, Bateman, Alex
Publicado 2010

Functional transcriptomics in the post-ENCODE era

por Mudge, Jonathan M., Frankish, Adam, Harrow, Jennifer
Publicado 2013

Progress, Challenges, and Surprises in Annotating the Human Genome

por Zerbino, Daniel R., Frankish, Adam, Flicek, Paul
Publicado 2020

The importance of identifying alternative splicing in vertebrate genome annotation

por Frankish, Adam, Mudge, Jonathan M., Thomas, Mark, Harrow, Jennifer
Publicado 2012

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

por Zhang, Zhengdong D, Frankish, Adam, Hunt, Toby, Harrow, Jennifer, Gerstein, Mark
Publicado 2010

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

por Gonzàlez-Porta, Mar, Frankish, Adam, Rung, Johan, Harrow, Jennifer, Brazma, Alvis
Publicado 2013

Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay

por Pervouchine, Dmitri, Popov, Yaroslav, Berry, Andy, Borsari, Beatrice, Frankish, Adam, Guigó, Roderic
Publicado 2019

Getting the Entire Message: Progress in Isoform Sequencing

por Hardwick, Simon A., Joglekar, Anoushka, Flicek, Paul, Frankish, Adam, Tilgner, Hagen U.
Publicado 2019

SCN1A: bioinformatically informed revised boundaries for promoter and enhancer regions

por Pagni, Susanna, Custodio, Helena Martins, Frankish, Adam, Mudge, Jonathan M, Mills, James D, Sisodiya, Sanjay M
Publicado 2023

Genome annotation for clinical genomic diagnostics: strengths and weaknesses

por Steward, Charles A., Parker, Alasdair P. J., Minassian, Berge A., Sisodiya, Sanjay M., Frankish, Adam, Harrow, Jennifer
Publicado 2017

Defining the human reference protein-coding gene set

por Balasubramanian, Suganthi, Habegger, Lukas, Frankish, Adam, MacArthur, Daniel, Harte, Rachel, Tyler-Smith, Chris, Harrow, Jennifer, Gerstein, Mark
Publicado 2010

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

por Balasubramanian, Suganthi, Zheng, Deyou, Liu, Yuen-Jong, Fang, Gang, Frankish, Adam, Carriero, Nicholas, Robilotto, Rebecca, Cayting, Philip, Gerstein, Mark
Publicado 2009

Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function

por Ezkurdia, Iakes, del Pozo, Angela, Frankish, Adam, Rodriguez, Jose Manuel, Harrow, Jennifer, Ashman, Keith, Valencia, Alfonso, Tress, Michael L.
Publicado 2012

Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes

por Ezkurdia, Iakes, Juan, David, Rodriguez, Jose Manuel, Frankish, Adam, Diekhans, Mark, Harrow, Jennifer, Vazquez, Jesus, Valencia, Alfonso, Tress, Michael L.
Publicado 2014

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

por Bajic, Vladimir B, Brent, Michael R, Brown, Randall H, Frankish, Adam, Harrow, Jennifer, Ohler, Uwe, Solovyev, Victor V, Tan, Sin Lam
Publicado 2006

The value of primary transcripts to the clinical and non‐clinical genomics community: Survey results and roadmap for improvements

por Morales, Joannella, McMahon, Aoife C., Loveland, Jane, Perry, Emily, Frankish, Adam, Hunt, Sarah, Armean, Irina M., Flicek, Paul, Cunningham, Fiona
Publicado 2021

The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates

por Mudge, Jonathan M., Frankish, Adam, Fernandez-Banet, Julio, Alioto, Tyler, Derrien, Thomas, Howald, Cédric, Reymond, Alexandre, Guigó, Roderic, Hubbard, Tim, Harrow, Jennifer
Publicado 2011

Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

por Frankish, Adam, Uszczynska, Barbara, Ritchie, Graham RS, Gonzalez, Jose M, Pervouchine, Dmitri, Petryszak, Robert, Mudge, Jonathan M, Fonseca, Nuno, Brazma, Alvis, Guigo, Roderic, Harrow, Jennifer
Publicado 2015

High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing

por Lagarde, Julien, Uszczynska-Ratajczak, Barbara, Carbonell, Silvia, Pérez-Lluch, Sílvia, Abad, Amaya, Davis, Carrie, Gingeras, Thomas R., Frankish, Adam, Harrow, Jennifer, Guigo, Roderic, Johnson, Rory
Publicado 2017

Transcriptional activity and strain-specific history of mouse pseudogenes

por Sisu, Cristina, Muir, Paul, Frankish, Adam, Fiddes, Ian, Diekhans, Mark, Thybert, David, Odom, Duncan T., Flicek, Paul, Keane, Thomas M., Hubbard, Tim, Harrow, Jennifer, Gerstein, Mark
Publicado 2020