Inferring Bottlenecks from Genome-Wide Samples of Short Sequence Blocks

por Bunnefeld, Lynsey, Frantz, Laurent A. F., Lohse, Konrad
Publicado 2015

ABLE: blockwise site frequency spectra for inferring complex population histories and recombination

por Beeravolu, Champak R., Hickerson, Michael J., Frantz, Laurent A. F., Lohse, Konrad
Publicado 2018

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research

por Velsko, Irina M., Frantz, Laurent A. F., Herbig, Alexander, Larson, Greger, Warinner, Christina
Publicado 2018

Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations

por Frantz, Laurent A F, Madsen, Ole, Megens, Hendrik-Jan, Groenen, Martien A M, Lohse, Konrad
Publicado 2014

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data

por Dimopoulos, Evangelos A., Carmagnini, Alberto, Velsko, Irina M., Warinner, Christina, Larson, Greger, Frantz, Laurent A. F., Irving-Pease, Evan K.
Publicado 2022

Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1

por Bosse, Mirte, Madsen, Ole, Megens, Hendrik-Jan, Frantz, Laurent A. F., Paudel, Yogesh, Crooijmans, Richard P. M. A., Groenen, Martien A. M.
Publicado 2015

Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors

por Paudel, Yogesh, Madsen, Ole, Megens, Hendrik-Jan, Frantz, Laurent A F, Bosse, Mirte, Crooijmans, Richard P M A, Groenen, Martien A M
Publicado 2015

Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape

por Bosse, Mirte, Megens, Hendrik-Jan, Madsen, Ole, Paudel, Yogesh, Frantz, Laurent A. F., Schook, Lawrence B., Crooijmans, Richard P. M. A., Groenen, Martien A. M.
Publicado 2012

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion

por Liu, Langqing, Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Lee, Young-Lim, Irving-Pease, Evan K., Narayan, Goutam, Groenen, Martien A. M., Madsen, Ole
Publicado 2019

Addendum: Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion

por Liu, Langqing, Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Lee, Young-Lim, Irving-Pease, Evan K., Narayan, Goutam, Groenen, Martien A. M., Madsen, Ole
Publicado 2020

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

por Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Madsen, Ole, Larson, Greger, Paudel, Yogesh, Duijvesteijn, Naomi, Harlizius, Barbara, Hagemeijer, Yanick, Crooijmans, Richard P. M. A., Groenen, Martien A. M.
Publicado 2014

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage

por Velsko, Irina M., Fellows Yates, James A., Aron, Franziska, Hagan, Richard W., Frantz, Laurent A. F., Loe, Louise, Martinez, Juan Bautista Rodriguez, Chaves, Eros, Gosden, Chris, Larson, Greger, Warinner, Christina
Publicado 2019

Genome-wide local ancestry and evidence for mitonuclear coadaptation in African hybrid cattle populations

por Ward, James A., McHugo, Gillian P., Dover, Michael J., Hall, Thomas J., Ng'ang'a, Said Ismael, Sonstegard, Tad S., Bradley, Daniel G., Frantz, Laurent A.F., Salter-Townshend, Michael, MacHugh, David E.
Publicado 2022

The dental calculus metabolome in modern and historic samples

por Velsko, Irina M., Overmyer, Katherine A., Speller, Camilla, Klaus, Lauren, Collins, Matthew J., Loe, Louise, Frantz, Laurent A. F., Sankaranarayanan, Krithivasan, Lewis, Cecil M., Martinez, Juan Bautista Rodriguez, Chaves, Eros, Coon, Joshua J., Larson, Greger, Warinner, Christina
Publicado 2017

Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors

por Fiddaman, Steven R, Vinkler, Michal, Spiro, Simon G, Levy, Hila, Emerling, Christopher A, Boyd, Amy C, Dimopoulos, Evangelos A, Vianna, Juliana A, Cole, Theresa L, Pan, Hailin, Fang, Miaoquan, Zhang, Guojie, Hart, Tom, Frantz, Laurent A F, Smith, Adrian L
Publicado 2021

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

por Rice, Edward S., Alberdi, Antton, Alfieri, James, Athrey, Giridhar, Balacco, Jennifer R., Bardou, Philippe, Blackmon, Heath, Charles, Mathieu, Cheng, Hans H., Fedrigo, Olivier, Fiddaman, Steven R., Formenti, Giulio, Frantz, Laurent A. F., Gilbert, M. Thomas P., Hearn, Cari J., Jarvis, Erich D., Klopp, Christophe, Marcos, Sofia, Mason, Andrew S., Velez-Irizarry, Deborah, Xu, Luohao, Warren, Wesley C.
Publicado 2023

Evidence of Pathogen-Induced Immunogenetic Selection across the Large Geographic Range of a Wild Seabird

por Levy, Hila, Fiddaman, Steven R, Vianna, Juliana A, Noll, Daly, Clucas, Gemma V, Sidhu, Jasmine K H, Polito, Michael J, Bost, Charles A, Phillips, Richard A, Crofts, Sarah, Miller, Gary D, Pistorius, Pierre, Bonnadonna, Francesco, Le Bohec, Céline, Barbosa, Andrés, Trathan, Phil, Raya Rey, Andrea, Frantz, Laurent A F, Hart, Tom, Smith, Adrian L
Publicado 2020

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

por Ramos-Madrigal, Jazmín, Sinding, Mikkel-Holger S., Carøe, Christian, Mak, Sarah S.T., Niemann, Jonas, Samaniego Castruita, José A., Fedorov, Sergey, Kandyba, Alexander, Germonpré, Mietje, Bocherens, Hervé, Feuerborn, Tatiana R., Pitulko, Vladimir V., Pavlova, Elena Y., Nikolskiy, Pavel A., Kasparov, Aleksei K., Ivanova, Varvara V., Larson, Greger, Frantz, Laurent A.F., Willerslev, Eske, Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P., Gopalakrishnan, Shyam
Publicado 2021

Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation

por Zeng, Lin, Liu, He-Qun, Tu, Xiao-Long, Ji, Chang-Mian, Gou, Xiao, Esmailizadeh, Ali, Wang, Sheng, Wang, Ming-Shan, Wang, Ming-Cheng, Li, Xiao-Long, Charati, Hadi, Adeola, Adeniyi C., Moshood Adedokun, Rahamon Akinyele, Oladipo, Olatunbosun, Olaogun, Sunday Charles, Sanke, Oscar J., Godwin F., Mangbon, Cecily Ommeh, Sheila, Agwanda, Bernard, Kasiiti Lichoti, Jacqueline, Han, Jian-Lin, Zheng, Hong-Kun, Wang, Chang-Fa, Zhang, Ya-Ping, Frantz, Laurent A. F., Wu, Dong-Dong
Publicado 2021

Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events

por Frantz, Laurent A. F., Rudzinski, Anna, Nugraha, Abang Mansyursyah Surya, Evin, Allowen, Burton, James, Hulme-Beaman, Ardern, Linderholm, Anna, Barnett, Ross, Vega, Rodrigo, Irving-Pease, Evan K., Haile, James, Allen, Richard, Leus, Kristin, Shephard, Jill, Hillyer, Mia, Gillemot, Sarah, van den Hurk, Jeroen, Ogle, Sharron, Atofanei, Cristina, Thomas, Mark G., Johansson, Friederike, Mustari, Abdul Haris, Williams, John, Mohamad, Kusdiantoro, Damayanti, Chandramaya Siska, Wiryadi, Ita Djuwita, Obbles, Dagmar, Mona, Stephano, Day, Hally, Yasin, Muhammad, Meker, Stefan, McGuire, Jimmy A., Evans, Ben J., von Rintelen, Thomas, Ho, Simon Y. W., Searle, Jeremy B., Kitchener, Andrew C., Macdonald, Alastair A., Shaw, Darren J., Hall, Robert, Galbusera, Peter, Larson, Greger
Publicado 2018