Independent Effects of Protein Core Size and Expression on Residue-Level Structure-Evolution Relationships

por Franzosa, Eric A., Xia, Yu
Publicado 2012

Toward a three-dimensional view of protein networks between species

por Franzosa, Eric A., Garamszegi, Sara, Xia, Yu
Publicado 2012

Quantitative Residue-Level Structure–Evolution Relationships in the Yeast Membrane Proteome

por Franzosa, Eric A., Xue, Ran, Xia, Yu
Publicado 2013

Signatures of Pleiotropy, Economy and Convergent Evolution in a Domain-Resolved Map of Human–Virus Protein–Protein Interaction Networks

por Garamszegi, Sara, Franzosa, Eric A., Xia, Yu
Publicado 2013

Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate

por Xia, Yu, Franzosa, Eric A., Gerstein, Mark B.
Publicado 2009

Protein evolution in yeast transcription factor subnetworks

por Wang, Yong, Franzosa, Eric A., Zhang, Xiang-Sun, Xia, Yu
Publicado 2010

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

por Hill, Jennifer Hampton, Franzosa, Eric A, Huttenhower, Curtis, Guillemin, Karen
Publicado 2016

Strain-level epidemiology of microbial communities and the human microbiome

por Yan, Yan, Nguyen, Long H., Franzosa, Eric A., Huttenhower, Curtis
Publicado 2020

Statistical approaches for differential expression analysis in metatranscriptomics

por Zhang, Yancong, Thompson, Kelsey N, Huttenhower, Curtis, Franzosa, Eric A
Publicado 2021

Heterozygous Yeast Deletion Collection Screens Reveal Essential Targets of Hsp90

por Franzosa, Eric A., Albanèse, Véronique, Frydman, Judith, Xia, Yu, McClellan, Amie J.
Publicado 2011

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

por Kaminski, James, Gibson, Molly K., Franzosa, Eric A., Segata, Nicola, Dantas, Gautam, Huttenhower, Curtis
Publicado 2015

Experimental design and quantitative analysis of microbial community multiomics

por Mallick, Himel, Ma, Siyuan, Franzosa, Eric A., Vatanen, Tommi, Morgan, Xochitl C., Huttenhower, Curtis
Publicado 2017

Functional profiling of the gut microbiome in disease-associated inflammation

por Börnigen, Daniela, Morgan, Xochitl C, Franzosa, Eric A, Ren, Boyu, Xavier, Ramnik J, Garrett, Wendy S, Huttenhower, Curtis
Publicado 2013

bioBakery: a meta’omic analysis environment

por McIver, Lauren J, Abu-Ali, Galeb, Franzosa, Eric A, Schwager, Randall, Morgan, Xochitl C, Waldron, Levi, Segata, Nicola, Huttenhower, Curtis
Publicado 2018

RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities

por Wang, Ya, Thompson, Kelsey N., Yan, Yan, Short, Meghan I., Zhang, Yancong, Franzosa, Eric A., Shen, Jiaxian, Hartmann, Erica M., Huttenhower, Curtis
Publicado 2023

Profiling novel lateral gene transfer events in the human microbiome

por Hsu, Tiffany Y., Nzabarushimana, Etienne, Wong, Dennis, Luo, Chengwei, Beiko, Robert G., Langille, Morgan, Huttenhower, Curtis, Nguyen, Long H., Franzosa, Eric A.
Publicado 2023

Host genetic variation and its microbiome interactions within the Human Microbiome Project

por Kolde, Raivo, Franzosa, Eric A., Rahnavard, Gholamali, Hall, Andrew Brantley, Vlamakis, Hera, Stevens, Christine, Daly, Mark J., Xavier, Ramnik J., Huttenhower, Curtis
Publicado 2018

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

por Mallick, Himel, Franzosa, Eric A., Mclver, Lauren J., Banerjee, Soumya, Sirota-Madi, Alexandra, Kostic, Aleksandar D., Clish, Clary B., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis
Publicado 2019

A reproducible approach to high-throughput biological data acquisition and integration

por Börnigen, Daniela, Moon, Yo Sup, Rahnavard, Gholamali, Waldron, Levi, McIver, Lauren, Shafquat, Afrah, Franzosa, Eric A., Miropolsky, Larissa, Sweeney, Christopher, Morgan, Xochitl C., Garrett, Wendy S., Huttenhower, Curtis
Publicado 2015

Species-level functional profiling of metagenomes and metatranscriptomes

por Franzosa, Eric A., McIver, Lauren J., Rahnavard, Gholamali, Thompson, Luke R., Schirmer, Melanie, Weingart, George, Lipson, Karen Schwarzberg, Knight, Rob, Caporaso, J. Gregory, Segata, Nicola, Huttenhower, Curtis
Publicado 2018