Estimating and mapping ecological processes influencing microbial community assembly

por Stegen, James C., Lin, Xueju, Fredrickson, Jim K., Konopka, Allan E.
Publicado 2015

Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities

por Song, Hyun-Seob, Renslow, Ryan S., Fredrickson, Jim K., Lindemann, Stephen R.
Publicado 2015

Editorial: Systems Biology and Ecology of Microbial Mat Communities

por Klotz, Martin G., Bryant, Donald A., Fredrickson, Jim K., Inskeep, William P., Kühl, Michael
Publicado 2016

Sustained H(2) Production Driven by Photosynthetic Water Splitting in a Unicellular Cyanobacterium

por Melnicki, Matthew R., Pinchuk, Grigoriy E., Hill, Eric A., Kucek, Leo A., Fredrickson, Jim K., Konopka, Allan, Beliaev, Alexander S.
Publicado 2012

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

por Graham, Emily B., Crump, Alex R., Resch, Charles T., Fansler, Sarah, Arntzen, Evan, Kennedy, David W., Fredrickson, Jim K., Stegen, James C.
Publicado 2016

Engineering microbial consortia for controllable outputs

por Lindemann, Stephen R, Bernstein, Hans C, Song, Hyun-Seob, Fredrickson, Jim K, Fields, Matthew W, Shou, Wenying, Johnson, David R, Beliaev, Alexander S
Publicado 2016

Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data

por Lee, Joon-Yong, Haruta, Shin, Kato, Souichiro, Bernstein, Hans C., Lindemann, Stephen R., Lee, Dong-Yup, Fredrickson, Jim K., Song, Hyun-Seob
Publicado 2020

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities

por Song, Hyun-Seob, Lee, Joon-Yong, Haruta, Shin, Nelson, William C., Lee, Dong-Yup, Lindemann, Stephen R., Fredrickson, Jim K., Bernstein, Hans C.
Publicado 2019

Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process

por Song, Hyun-Seob, Thomas, Dennis G., Stegen, James C., Li, Minjing, Liu, Chongxuan, Song, Xuehang, Chen, Xingyuan, Fredrickson, Jim K., Zachara, John M., Scheibe, Timothy D.
Publicado 2017

Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

por Stegen, James C., Konopka, Allan, McKinley, James P., Murray, Chris, Lin, Xueju, Miller, Micah D., Kennedy, David W., Miller, Erin A., Resch, Charles T., Fredrickson, Jim K.
Publicado 2016

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.

por Edwards, Marcus J., White, Gaye F., Norman, Michael, Tome-Fernandez, Alice, Ainsworth, Emma, Shi, Liang, Fredrickson, Jim K., Zachara, John M., Butt, Julea N., Richardson, David J., Clarke, Thomas A.
Publicado 2015

Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a

por Stolyar, Sergey, Liu, Zhenfeng, Thiel, Vera, Tomsho, Lynn P., Pinel, Nicolas, Nelson, William C., Lindemann, Stephen R., Romine, Margie F., Haruta, Shin, Schuster, Stephan C., Bryant, Donald A., Fredrickson, Jim K.
Publicado 2014

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

por Cole, Jessica K., Hutchison, Janine R., Renslow, Ryan S., Kim, Young-Mo, Chrisler, William B., Engelmann, Heather E., Dohnalkova, Alice C., Hu, Dehong, Metz, Thomas O., Fredrickson, Jim K., Lindemann, Stephen R.
Publicado 2014

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142

por Vu, Trang T., Stolyar, Sergey M., Pinchuk, Grigoriy E., Hill, Eric A., Kucek, Leo A., Brown, Roslyn N., Lipton, Mary S., Osterman, Andrei, Fredrickson, Jim K., Konopka, Allan E., Beliaev, Alexander S., Reed, Jennifer L.
Publicado 2012

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

por Bernstein, Hans C., McClure, Ryan S., Thiel, Vera, Sadler, Natalie C., Kim, Young-Mo, Chrisler, William B., Hill, Eric A., Bryant, Donald A., Romine, Margaret F., Jansson, Janet K., Fredrickson, Jim K., Beliaev, Alexander S.
Publicado 2017

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

por Pinchuk, Grigoriy E., Hill, Eric A., Geydebrekht, Oleg V., De Ingeniis, Jessica, Zhang, Xiaolin, Osterman, Andrei, Scott, James H., Reed, Samantha B., Romine, Margaret F., Konopka, Allan E., Beliaev, Alexander S., Fredrickson, Jim K., Reed, Jennifer L.
Publicado 2010

Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes

por Karpinets, Tatiana V., Obraztsova, Anna Y., Wang, Yanbing, Schmoyer, Denise D., Kora, Guruprasad H., Park, Byung H., Serres, Margrethe H., Romine, Margaret F., Land, Miriam L., Kothe, Terence B., Fredrickson, Jim K., Nealson, Kenneth H., Uberbacher, Edward C.
Publicado 2009

Trends and future challenges in sampling the deep terrestrial biosphere

por Wilkins, Michael J., Daly, Rebecca A., Mouser, Paula J., Trexler, Ryan, Sharma, Shihka, Cole, David R., Wrighton, Kelly C., Biddle, Jennifer F., Denis, Elizabeth H., Fredrickson, Jim K., Kieft, Thomas L., Onstott, Tullis C., Peterson, Lee, Pfiffner, Susan M., Phelps, Tommy J., Schrenk, Matthew O.
Publicado 2014