Computational Analysis of Virus–Host Interactomes

por Friedel, Caroline C.
Publicado 2013

RegCFinder: targeted discovery of genomic subregions with differential read density

por Weiß, Elena, Friedel, Caroline C
Publicado 2023

Inferring topology from clustering coefficients in protein-protein interaction networks

por Friedel, Caroline C, Zimmer, Ralf
Publicado 2006

Influence of degree correlations on network structure and stability in protein-protein interaction networks

por Friedel, Caroline C, Zimmer, Ralf
Publicado 2007

Identifying the topology of protein complexes from affinity purification assays

por Friedel, Caroline C., Zimmer, Ralf
Publicado 2009

A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

por Lindner, Robert, Friedel, Caroline C.
Publicado 2012

Prediction of Poly(A) Sites by Poly(A) Read Mapping

por Bonfert, Thomas, Friedel, Caroline C.
Publicado 2017

Watchdog – a workflow management system for the distributed analysis of large-scale experimental data

por Kluge, Michael, Friedel, Caroline C.
Publicado 2018

FERN – a Java framework for stochastic simulation and evaluation of reaction networks

por Erhard, Florian, Friedel, Caroline C, Zimmer, Ralf
Publicado 2008

A context-based approach to identify the most likely mapping for RNA-seq experiments

por Bonfert, Thomas, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C
Publicado 2012

Detection and correction of probe-level artefacts on microarrays

por Petri, Tobias, Berchtold, Evi, Zimmer, Ralf, Friedel, Caroline C
Publicado 2012

Mining RNA–Seq Data for Infections and Contaminations

por Bonfert, Thomas, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C.
Publicado 2013

Real-time Analysis of Transcription Factor Binding, Transcription, Translation, and Turnover to Display Global Events During Cellular Activation

por Davari, Kathrin, Lichti, Johannes, Friedel, Caroline C., Glasmacher, Elke
Publicado 2018

ContextMap 2: fast and accurate context-based RNA-seq mapping

por Bonfert, Thomas, Kirner, Evelyn, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C
Publicado 2015

Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution

por Kluge, Michael, Friedl, Marie-Sophie, Menzel, Amrei L, Friedel, Caroline C
Publicado 2020

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

por Friedel, Caroline C., Dölken, Lars, Ruzsics, Zsolt, Koszinowski, Ulrich H., Zimmer, Ralf
Publicado 2009

Clonal Expansion Analysis of Transposon Insertions by High-Throughput Sequencing Identifies Candidate Cancer Genes in a PiggyBac Mutagenesis Screen

por Friedel, Roland H., Friedel, Caroline C., Bonfert, Thomas, Shi, Ruijin, Rad, Roland, Soriano, Philippe
Publicado 2013

Inhibition of CDK12 elevates cancer cell dependence on P-TEFb by stimulation of RNA polymerase II pause release

por Wang, Zhijia, Himanen, Samu V, Haikala, Heidi M, Friedel, Caroline C, Vihervaara, Anniina, Barborič, Matjaž
Publicado 2023

Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1

por Decker, Tim-Michael, Kluge, Michael, Krebs, Stefan, Shah, Nilay, Blum, Helmut, Friedel, Caroline C., Eick, Dirk
Publicado 2017

Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm

por Spasic, Milan, Friedel, Caroline C., Schott, Johanna, Kreth, Jochen, Leppek, Kathrin, Hofmann, Sarah, Ozgur, Sevim, Stoecklin, Georg
Publicado 2012