Understanding Drivers of Phylogenetic Clustering in Molecular Epidemiological Studies of HIV

por Frost, Simon D. W., Pillay, Deenan
Publicado 2015

Viral phylodynamics and the search for an ‘effective number of infections’

por Frost, Simon D. W., Volz, Erik M.
Publicado 2010

Modelling tree shape and structure in viral phylodynamics

por Frost, Simon D. W., Volz, Erik M.
Publicado 2013

Inferring the Source of Transmission with Phylogenetic Data

por Volz, Erik M., Frost, Simon D. W.
Publicado 2013

Sampling through time and phylodynamic inference with coalescent and birth–death models

por Volz, Erik M., Frost, Simon D. W.
Publicado 2014

Measuring Asymmetry in Time-Stamped Phylogenies

por Dearlove, Bethany L., Frost, Simon D. W.
Publicado 2015

Biased phylodynamic inferences from analysing clusters of viral sequences

por Dearlove, Bethany L., Xiang, Fei, Frost, Simon D. W.
Publicado 2017

The role of venues in structuring HIV, sexually transmitted infections, and risk networks among men who have sex with men

por Drumright, Lydia N., Weir, Sharon S., Frost, Simon D. W.
Publicado 2018

The Bacteria Genome Pipeline (BAGEP): an automated, scalable workflow for bacteria genomes with Snakemake

por Olawoye, Idowu B., Frost, Simon D.W., Happi, Christian T.
Publicado 2020

Neutral Theory and Rapidly Evolving Viral Pathogens

por Frost, Simon D W, Magalis, Brittany Rife, Kosakovsky Pond, Sergei L
Publicado 2018

Model design for nonparametric phylodynamic inference and applications to pathogen surveillance

por Didelot, Xavier, Franceschi, Vinicius, Frost, Simon D. W, Dennis, Ann, Volz, Erik M
Publicado 2023

Molecular Epidemiology and Evolutionary Dynamics of Human Influenza Type-A Viruses in Africa: A Systematic Review

por Nabakooza, Grace, Galiwango, Ronald, Frost, Simon D. W., Kateete, David P., Kitayimbwa, John M.
Publicado 2022

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope

por Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Publicado 2007

An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope

por Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Publicado 2007

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

por Volz, Erik M., Koopman, James S., Ward, Melissa J., Brown, Andrew Leigh, Frost, Simon D. W.
Publicado 2012

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS

por Tonkin-Hill, Gerry, Lees, John A., Bentley, Stephen D., Frost, Simon D.W., Corander, Jukka
Publicado 2018

Fast hierarchical Bayesian analysis of population structure

por Tonkin-Hill, Gerry, Lees, John A, Bentley, Stephen D, Frost, Simon D W, Corander, Jukka
Publicado 2019

Cross-Continental Dispersal of Major HIV-1 CRF01_AE Clusters in China

por An, Minghui, Han, Xiaoxu, Zhao, Bin, English, Suzanne, Frost, Simon D. W., Zhang, Hongyi, Shang, Hong
Publicado 2020

Eight challenges in phylodynamic inference

por Frost, Simon D.W., Pybus, Oliver G., Gog, Julia R., Viboud, Cecile, Bonhoeffer, Sebastian, Bedford, Trevor
Publicado 2015

Assigning and visualizing germline genes in antibody repertoires

por Frost, Simon D. W., Murrell, Ben, Hossain, A. S. Md. Mukarram, Silverman, Gregg J., Pond, Sergei L. Kosakovsky
Publicado 2015