Dynamic CRM occupancy reflects a temporal map of developmental progression

por Wilczyński, Bartek, Furlong, Eileen E M
Publicado 2010

The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila

por Gambetta, Maria Cristina, Furlong, Eileen E. M.
Publicado 2018

Dynamix: dynamic visualization by automatic selection of informative tracks from hundreds of genomic datasets

por Monfort, Matthias, Furlong, Eileen E M, Girardot, Charles
Publicado 2017

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

por Wilczynski, Bartek, Liu, Ya-Hsin, Yeo, Zhen Xuan, Furlong, Eileen E. M.
Publicado 2012

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

por Ciglar, Lucia, Girardot, Charles, Wilczyński, Bartek, Braun, Martina, Furlong, Eileen E. M.
Publicado 2014

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories

por Secchia, Stefano, Forneris, Mattia, Heinen, Tobias, Stegle, Oliver, Furlong, Eileen E.M.
Publicado 2022

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

por Girardot, Charles, Scholtalbers, Jelle, Sauer, Sajoscha, Su, Shu-Yi, Furlong, Eileen E.M.
Publicado 2016

scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation

por Heinen, Tobias, Secchia, Stefano, Reddington, James P., Zhao, Bingqing, Furlong, Eileen E. M., Stegle, Oliver
Publicado 2022

Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity

por Erceg, Jelena, Saunders, Timothy E., Girardot, Charles, Devos, Damien P., Hufnagel, Lars, Furlong, Eileen E. M.
Publicado 2014

FourCSeq: analysis of 4C sequencing data

por Klein, Felix A., Pakozdi, Tibor, Anders, Simon, Ghavi-Helm, Yad, Furlong, Eileen E. M., Huber, Wolfgang
Publicado 2015

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

por Kögler, Anna C., Kherdjemil, Yacine, Bender, Katharina, Rabinowitz, Adam, Marco-Ferreres, Raquel, Furlong, Eileen E.M.
Publicado 2021

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

por Ghavi-Helm, Yad, Jankowski, Aleksander, Meiers, Sascha, Viales, Rebecca R., Korbel, Jan O., Furlong, Eileen E.M.
Publicado 2019

Combinatorial Binding Leads to Diverse Regulatory Responses: Lmd Is a Tissue-Specific Modulator of Mef2 Activity

por Cunha, Paulo M. F., Sandmann, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Eichenlaub, Michael P., Furlong, Eileen E. M.
Publicado 2010

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

por Mikhaylichenko, Olga, Bondarenko, Vladyslav, Harnett, Dermot, Schor, Ignacio E., Males, Matilda, Viales, Rebecca R., Furlong, Eileen E.M.
Publicado 2018

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

por Erceg, Jelena, Pakozdi, Tibor, Marco-Ferreres, Raquel, Ghavi-Helm, Yad, Girardot, Charles, Bracken, Adrian P., Furlong, Eileen E.M.
Publicado 2017

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

por Schor, Ignacio E., Bussotti, Giovanni, Maleš, Matilda, Forneris, Mattia, Viales, Rebecca R., Enright, Anton J., Furlong, Eileen E.M.
Publicado 2018

The Role of Chromatin Accessibility in cis-Regulatory Evolution

por Peng, Pei-Chen, Khoueiry, Pierre, Girardot, Charles, Reddington, James P, Garfield, David A, Furlong, Eileen E M, Sinha, Saurabh
Publicado 2019

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

por Liu, Jialin, Viales, Rebecca R., Khoueiry, Pierre, Reddington, James P., Girardot, Charles, Furlong, Eileen E.M., Robinson-Rechavi, Marc
Publicado 2021

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

por Zichner, Thomas, Garfield, David A., Rausch, Tobias, Stütz, Adrian M., Cannavó, Enrico, Braun, Martina, Furlong, Eileen E.M., Korbel, Jan O.
Publicado 2013

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

por Mbodj, Abibatou, Gustafson, E. Hilary, Ciglar, Lucia, Junion, Guillaume, Gonzalez, Aitor, Girardot, Charles, Perrin, Laurent, Furlong, Eileen E. M., Thieffry, Denis
Publicado 2016