Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

por Zinzen, Robert P, Furlong, Eileen EM
Publicado 2008

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories

por Secchia, Stefano, Forneris, Mattia, Heinen, Tobias, Stegle, Oliver, Furlong, Eileen E.M.
Publicado 2022

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

por Girardot, Charles, Scholtalbers, Jelle, Sauer, Sajoscha, Su, Shu-Yi, Furlong, Eileen E.M.
Publicado 2016

Predictive features of gene expression variation reveal mechanistic link with differential expression

por Sigalova, Olga M, Shaeiri, Amirreza, Forneris, Mattia, Furlong, Eileen EM, Zaugg, Judith B
Publicado 2020

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

por Kögler, Anna C., Kherdjemil, Yacine, Bender, Katharina, Rabinowitz, Adam, Marco-Ferreres, Raquel, Furlong, Eileen E.M.
Publicado 2021

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

por Khoueiry, Pierre, Girardot, Charles, Ciglar, Lucia, Peng, Pei-Chen, Gustafson, E Hilary, Sinha, Saurabh, Furlong, Eileen EM
Publicado 2017

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

por Ghavi-Helm, Yad, Jankowski, Aleksander, Meiers, Sascha, Viales, Rebecca R., Korbel, Jan O., Furlong, Eileen E.M.
Publicado 2019

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

por Mikhaylichenko, Olga, Bondarenko, Vladyslav, Harnett, Dermot, Schor, Ignacio E., Males, Matilda, Viales, Rebecca R., Furlong, Eileen E.M.
Publicado 2018

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

por Erceg, Jelena, Pakozdi, Tibor, Marco-Ferreres, Raquel, Ghavi-Helm, Yad, Girardot, Charles, Bracken, Adrian P., Furlong, Eileen E.M.
Publicado 2017

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

por Schor, Ignacio E., Bussotti, Giovanni, Maleš, Matilda, Forneris, Mattia, Viales, Rebecca R., Enright, Anton J., Furlong, Eileen E.M.
Publicado 2018

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

por Liu, Jialin, Viales, Rebecca R., Khoueiry, Pierre, Reddington, James P., Girardot, Charles, Furlong, Eileen E.M., Robinson-Rechavi, Marc
Publicado 2021

Analysis of variation at transcription factor binding sites in Drosophila and humans

por Spivakov, Mikhail, Akhtar, Junaid, Kheradpour, Pouya, Beal, Kathryn, Girardot, Charles, Koscielny, Gautier, Herrero, Javier, Kellis, Manolis, Furlong, Eileen EM, Birney, Ewan
Publicado 2012

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

por Zichner, Thomas, Garfield, David A., Rausch, Tobias, Stütz, Adrian M., Cannavó, Enrico, Braun, Martina, Furlong, Eileen E.M., Korbel, Jan O.
Publicado 2013

Cis-acting variation is common across regulatory layers but is often buffered during embryonic development

por Floc'hlay, Swann, Wong, Emily S., Zhao, Bingqing, Viales, Rebecca R., Thomas-Chollier, Morgane, Thieffry, Denis, Garfield, David A., Furlong, Eileen E.M.
Publicado 2021

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

por Hooper, Sean D, Boué, Stephanie, Krause, Roland, Jensen, Lars J, Mason, Christopher E, Ghanim, Murad, White, Kevin P, Furlong, Eileen EM, Bork, Peer
Publicado 2007

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

por Cannavò, Enrico, Khoueiry, Pierre, Garfield, David A., Geeleher, Paul, Zichner, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Korbel, Jan O., Furlong, Eileen E.M.
Publicado 2016

A conserved role for Snail as a potentiator of active transcription

por Rembold, Martina, Ciglar, Lucia, Yáñez-Cuna, J. Omar, Zinzen, Robert P., Girardot, Charles, Jain, Ankit, Welte, Michael A., Stark, Alexander, Leptin, Maria, Furlong, Eileen E.M.
Publicado 2014

Next-generation sequencing-based detection of germline L1-mediated transductions

por Tica, Jelena, Lee, Eunjung, Untergasser, Andreas, Meiers, Sascha, Garfield, David A., Gokcumen, Omer, Furlong, Eileen E.M., Park, Peter J., Stütz, Adrian M., Korbel, Jan O.
Publicado 2016

The cis-regulatory dynamics of embryonic development at single cell resolution

por Cusanovich, Darren A., Reddington, James P., Garfield, David A., Daza, Riza, Aghamirzaie, Delasa, Marco-Ferreres, Raquel, Pliner, Hannah, Christiansen, Lena, Qiu, Xiaojie, Steemers, Frank J., Trapnell, Cole, Shendure, Jay, Furlong, Eileen E.M.
Publicado 2018