Epitope-Evaluator: An interactive web application to study predicted T-cell epitopes

por Soto, Luis Fernando, Requena, David, Fuxman Bass, Juan Ignacio
Publicado 2022

Identification of Single Nucleotide Non-coding Driver Mutations in Cancer

por Gan, Kok A., Carrasco Pro, Sebastian, Sewell, Jared A., Fuxman Bass, Juan I.
Publicado 2018

Prediction of genome-wide effects of single nucleotide variants on transcription factor binding

por Carrasco Pro, Sebastian, Bulekova, Katia, Gregor, Brian, Labadorf, Adam, Fuxman Bass, Juan Ignacio
Publicado 2020

Publisher Correction: Prediction of genome-wide effects of single nucleotide variants on transcription factor binding

por Carrasco Pro, Sebastian, Bulekova, Katia, Gregor, Brian, Labadorf, Adam, Fuxman Bass, Juan Ignacio
Publicado 2021

Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences

por Eslami Rasekh, Marzieh, Hernández, Yözen, Drinan, Samantha D, Fuxman Bass, Juan I, Benson, Gary
Publicado 2021

Therapeutic Targeting of Transcription Factors to Control the Cytokine Release Syndrome in COVID-19

por Santoso, Clarissa S., Li, Zhaorong, Rottenberg, Jaice T., Liu, Xing, Shen, Vivian X., Fuxman Bass, Juan I.
Publicado 2021

Human Virus Transcriptional Regulators

por Liu, Xing, Hong, Ted, Parameswaran, Sreeja, Ernst, Kevin, Marazzi, Ivan, Weirauch, Matthew T., Fuxman Bass, Juan I.
Publicado 2020

Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays

por Shrestha, Shaleen, Sewell, Jared Allan, Santoso, Clarissa Stephanie, Forchielli, Elena, Carrasco Pro, Sebastian, Martinez, Melissa, Fuxman Bass, Juan Ignacio
Publicado 2019

Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters

por Fuxman Bass, Juan I., Tamburino, Alex M., Mori, Akihiro, Beittel, Nathan, Weirauch, Matthew T., Reece-Hoyes, John S., Walhout, Albertha J. M.
Publicado 2014

Internalization of Locked Nucleic Acids/DNA Hybrid Oligomers into Escherichia coli

por Traglia, German M., Sala, Carol Davies, Fuxman Bass, Juan I., Soler-Bistué, Alfonso J.C., Zorreguieta, Angeles, Ramírez, María Soledad, Tolmasky, Marcelo E.
Publicado 2012

A gene‐centered C. elegans protein–DNA interaction network provides a framework for functional predictions

por Fuxman Bass, Juan I, Pons, Carles, Kozlowski, Lucie, Reece‐Hoyes, John S, Shrestha, Shaleen, Holdorf, Amy D, Mori, Akihiro, Myers, Chad L, Walhout, Albertha JM
Publicado 2016

Widespread perturbation of ETS factor binding sites in cancer

por Carrasco Pro, Sebastian, Hook, Heather, Bray, David, Berenzy, Daniel, Moyer, Devlin, Yin, Meimei, Labadorf, Adam Thomas, Tewhey, Ryan, Siggers, Trevor, Fuxman Bass, Juan Ignacio
Publicado 2023

Complex expression dynamics and robustness in C. elegans insulin networks

por Ritter, Ashlyn D., Shen, Yuan, Fuxman Bass, Juan, Jeyaraj, Sankarganesh, Deplancke, Bart, Mukhopadhyay, Arnab, Xu, Jian, Driscoll, Monica, Tissenbaum, Heidi A., Walhout, Albertha J.M.
Publicado 2013

Global landscape of mouse and human cytokine transcriptional regulation

por Carrasco Pro, Sebastian, Dafonte Imedio, Alvaro, Santoso, Clarissa Stephanie, Gan, Kok Ann, Sewell, Jared Allan, Martinez, Melissa, Sereda, Rebecca, Mehta, Shivani, Fuxman Bass, Juan Ignacio
Publicado 2018

Intragenic proviral elements support transcription of defective HIV-1 proviruses

por Kuniholm, Jeffrey, Armstrong, Elise, Bernabe, Brandy, Coote, Carolyn, Berenson, Anna, Patalano, Samantha D., Olson, Alex, He, Xianbao, Lin, Nina H., Fuxman Bass, Juan I., Henderson, Andrew J.
Publicado 2021

Comprehensive mapping of the human cytokine gene regulatory network

por Santoso, Clarissa S, Li, Zhaorong, Lal, Sneha, Yuan, Samson, Gan, Kok Ann, Agosto, Luis M, Liu, Xing, Pro, Sebastian Carrasco, Sewell, Jared A, Henderson, Andrew, Atianand, Maninjay K, Fuxman Bass, Juan I
Publicado 2020

Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities

por Narasimhan, Kamesh, Lambert, Samuel A, Yang, Ally WH, Riddell, Jeremy, Mnaimneh, Sanie, Zheng, Hong, Albu, Mihai, Najafabadi, Hamed S, Reece-Hoyes, John S, Fuxman Bass, Juan I, Walhout, Albertha JM, Weirauch, Matthew T, Hughes, Timothy R
Publicado 2015

Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors

por Berenson, Anna, Lane, Ryan, Soto-Ugaldi, Luis F., Patel, Mahir, Ciausu, Cosmin, Li, Zhaorong, Chen, Yilin, Shah, Sakshi, Santoso, Clarissa, Liu, Xing, Spirohn, Kerstin, Hao, Tong, Hill, David E., Vidal, Marc, Fuxman Bass, Juan I.
Publicado 2023