A Brave New World: Virtual Reality and Augmented Reality in Systems Biology

por Turhan, Berk, Gümüş, Zeynep H.
Publicado 2022

Are polygenic risk scores ready for the cancer clinic?—a perspective

por Klein, Robert J., Gümüş, Zeynep H.
Publicado 2022

Intrinsic K-Ras dynamics: A novel molecular dynamics data analysis method shows causality between residue pair motions

por Vatansever, Sezen, Gümüş, Zeynep H., Erman, Burak
Publicado 2016

Oncogenic G12D mutation alters local conformations and dynamics of K-Ras

por Vatansever, Sezen, Erman, Burak, Gümüş, Zeynep H.
Publicado 2019

Comparative effects of oncogenic mutations G12C, G12V, G13D, and Q61H on local conformations and dynamics of K-Ras

por Vatansever, Sezen, Erman, Burak, Gümüş, Zeynep H.
Publicado 2020

iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D

por Liluashvili, Vaja, Kalayci, Selim, Fluder, Eugene, Wilson, Manda, Gabow, Aaron, Gümüş, Zeynep H.
Publicado 2017

Germline rare deleterious variant load alters cancer risk, age of onset and tumor characteristics

por Esai Selvan, Myvizhi, Onel, Kenan, Gnjatic, Sacha, Klein, Robert J., Gümüş, Zeynep H.
Publicado 2023

Brain aging is faithfully modelled in organotypic brain slices and accelerated by prions

por Liu, Yingjun, Senatore, Assunta, Sorce, Silvia, Nuvolone, Mario, Guo, Jingjing, Gümüş, Zeynep H., Aguzzi, Adriano
Publicado 2022

Author Correction: Brain aging is faithfully modelled in organotypic brain slices and accelerated by prions

por Liu, Yingjun, Senatore, Assunta, Sorce, Silvia, Nuvolone, Mario, Guo, Jingjing, Gümüş, Zeynep H., Aguzzi, Adriano
Publicado 2022

Inhibition of colorectal cancer genomic copy number alterations and chromosomal fragile site tumor suppressor FHIT and WWOX deletions by DNA mismatch repair

por Jahid, Sohail, Sun, Jian, Gelincik, Ozkan, Blecua, Pedro, Edelmann, Winfried, Kucherlapati, Raju, Zhou, Kathy, Jasin, Maria, Gümüş, Zeynep H., Lipkin, Steven M.
Publicado 2017

Resistance/Response Molecular Signature for Oral Tongue Squamous Cell Carcinoma

por Suresh, Amritha, Vannan, Muhil, Kumaran, Dhanya, Gümüs, Zeynep H., Sivadas, Priya, Murugaian, Elango Erode, Kekatpure, Vikram, Iyer, Subramanian, Thangaraj, Kumarasamy, Kuriakose, Moni Abraham
Publicado 2012

Ancestry-specific predisposing germline variants in cancer

por Oak, Ninad, Cherniack, Andrew D., Mashl, R. Jay, Hirsch, Fred R., Ding, Li, Beroukhim, Rameen, Gümüş, Zeynep H., Plon, Sharon E., Huang, Kuan-lin
Publicado 2020

Handbook of test problems in local and global optimization

por Floudas, Christodoulos A, Pardalos, Pãnos M, Adjiman, Claire S, Esposito, William R, Gümüş, Zeynep H, Harding, Stephen T, Klepeis, John L, Meyer, Clifford A, Schweiger, Carl A
Publicado 1999

Ancestral reconstruction reveals mechanisms of ERK regulatory evolution

por Sang, Dajun, Pinglay, Sudarshan, Wiewiora, Rafal P, Selvan, Myvizhi E, Lou, Hua Jane, Chodera, John D, Turk, Benjamin E, Gümüş, Zeynep H, Holt, Liam J
Publicado 2019

A Machine Learning Approach for Hot-Spot Detection at Protein-Protein Interfaces

por Melo, Rita, Fieldhouse, Robert, Melo, André, Correia, João D. G., Cordeiro, Maria Natália D. S., Gümüş, Zeynep H., Costa, Joaquim, Bonvin, Alexandre M. J. J., Moreira, Irina S.
Publicado 2016

SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots

por Moreira, Irina S., Koukos, Panagiotis I., Melo, Rita, Almeida, Jose G., Preto, Antonio J., Schaarschmidt, Joerg, Trellet, Mikael, Gümüş, Zeynep H., Costa, Joaquim, Bonvin, Alexandre M. J. J.
Publicado 2017

ImmuneRegulation: a web-based tool for identifying human immune regulatory elements

por Kalayci, Selim, Selvan, Myvizhi Esai, Ramos, Irene, Cotsapas, Chris, Harris, Eva, Kim, Eun-Young, Montgomery, Ruth R, Poland, Gregory, Pulendran, Bali, Tsang, John S, Klein, Robert J, Gümüş, Zeynep H
Publicado 2019

KDM2B, an H3K36-specific demethylase, regulates apoptotic response of GBM cells to TRAIL

por Kurt, Ibrahim Cagri, Sur, Ilknur, Kaya, Ezgi, Cingoz, Ahmet, Kazancioglu, Selena, Kahya, Zeynep, Toparlak, Omer Duhan, Senbabaoglu, Filiz, Kaya, Zeynep, Ozyerli, Ezgi, Karahüseyinoglu, Sercin, Lack, Nathan A, Gümüs, Zeynep H, Onder, Tamer T, Bagci-Onder, Tugba
Publicado 2017

miR-1269 Promotes Metastasis and Forms a Positive Feedback Loop with TGF-β

por Bu, Pengcheng, Wang, Lihua, Chen, Kai-Yuan, Rakhilin, Nikolai, Sun, Jian, Closa, Adria, Tung, Kuei-Ling, King, Sarah, Varanko, Anastasia Kristine, Xu, Yitian, Chen, Joyce Huan, Zessin, Amelia S, Shealy, James, Cummings, Bethany, Hsu, David, Lipkin, Steven M., Moreno, Victor, Gümüş, Zeynep H., Shen, Xiling
Publicado 2015

Scientists without borders: lessons from Ukraine

por Wolfsberger, Walter, Chhugani, Karishma, Shchubelka, Khrystyna, Frolova, Alina, Salyha, Yuriy, Zlenko, Oksana, Arych, Mykhailo, Dziuba, Dmytro, Parkhomenko, Andrii, Smolanka, Volodymyr, Gümüş, Zeynep H, Sezgin, Efe, Diaz-Lameiro, Alondra, Toth, Viktor R, Maci, Megi, Bortz, Eric, Kondrashov, Fyodor, Morton, Patricia M, Łabaj, Paweł P, Romero, Veronika, Hlávka, Jakub, Mangul, Serghei, Oleksyk, Taras K
Publicado 2023