Ethidium bromide interactions with DNA: an exploration of a classic DNA–ligand complex with unbiased molecular dynamics simulations

por Galindo-Murillo, Rodrigo, Cheatham, Thomas E
Publicado 2021

Molecular dynamics simulations of acyclic analogs of nucleic acids for antisense inhibition

por Galindo-Murillo, Rodrigo, Cohen, Jack S., Akabayov, Barak
Publicado 2020

Structures and Dynamics of DNA Mini-Dumbbells Are Force Field Dependent

por Winkler, Lauren, Galindo-Murillo, Rodrigo, Cheatham, Thomas E.
Publicado 2023

On the absence of intra-helical DNA dynamics on the µs to ms timescale

por Galindo-Murillo, Rodrigo, Roe, Daniel R., Cheatham, Thomas E.
Publicado 2014

Assessing the Current State of Amber Force Field Modifications for DNA—2023 Edition

por Love, Olivia, Galindo-Murillo, Rodrigo, Zgarbová, Marie, Šponer, Jiří, Jurečka, Petr, Cheatham, Thomas E.
Publicado 2023

Computational Assessment of Potassium and Magnesium Ion Binding to a Buried Pocket in GTPase-Associating Center RNA

por Hayatshahi, Hamed S., Roe, Daniel R., Galindo-Murillo, Rodrigo, Hall, Kathleen B., Cheatham, Thomas E.
Publicado 2016

Intercalation processes of copper complexes in DNA

por Galindo-Murillo, Rodrigo, García-Ramos, Juan Carlos, Ruiz-Azuara, Lena, Cheatham, Thomas E., Cortés-Guzmán, Fernando
Publicado 2015

Assessing the Current State of Amber Force Field Modifications for DNA

por Galindo-Murillo, Rodrigo, Robertson, James C., Zgarbová, Marie, Šponer, Jiří, Otyepka, Michal, Jurečka, Petr, Cheatham, Thomas E.
Publicado 2016

AMBER parameters and topology data of 2-pentylpyrrole adduct of arginine with 4-hydroxy-2-nonenal

por Alviz-Amador, Antistio, Galindo-Murillo, Rodrigo, Pérez-González, Humberto, Rodríguez-Cavallo, Erika, Vivas-Reyes, Ricardo, Méndez-Cuadro, Darío
Publicado 2020

Ancillary Ligand in Ternary Cu(II) Complexes Guides Binding Selectivity toward Minor-Groove DNA

por Galindo-Murillo, Rodrigo, Winkler, Lauren, García-Ramos, Juan Carlos, Ruiz-Azuara, Lena, Cortés-Guzmán, Fernando, Cheatham, Thomas E.
Publicado 2020

Riboflavin Stabilizes Abasic, Oxidized G-Quadruplex Structures

por Galindo-Murillo, Rodrigo, Winkler, Lauren, Ma, Jingwei, Hanelli, Fatjon, Fleming, Aaron M., Burrows, Cynthia J., Cheatham, Thomas E.
Publicado 2022

Development and benchmark to obtain AMBER parameters dataset for non-standard amino acids modified with 4-hydroxy-2-nonenal

por Alviz-Amador, Antistio, Galindo-Murillo, Rodrigo, Pineda-Alemán, Rafael, Pérez-González, Humberto, Rodríguez-Cavallo, Erika, Vivas-Reyes, Ricardo, Méndez-Cuadro, Darío
Publicado 2018

The Amoebicidal Activity of Diferrocenyl Derivatives: A Significant Dependence on the Electronic Environment

por Toledano-Magaña, Yanis, Néquiz, Mario, Valenzuela-Salas, Lucía Margarita, Sánchez-García, Jessica J., Galindo-Murillo, Rodrigo, García-Ramos, Juan Carlos, Klimova, Elena I.
Publicado 2023

Oxazinin A, a Pseudodimeric Natural Product of Mixed Biosynthetic Origin from a Filamentous Fungus

por Lin, Zhenjian, Koch, Michael, Abdel Aziz, May Hamdy, Galindo-Murillo, Rodrigo, Tianero, Ma. Diarey, Cheatham, Thomas E., Barrows, Louis R., Reilly, Chris A., Schmidt, Eric W.
Publicado 2014

Whole Genome Gene Expression Analysis Reveals Casiopeína-Induced Apoptosis Pathways

por Valencia-Cruz, Alejandra Idan, Uribe-Figueroa, Laura I., Galindo-Murillo, Rodrigo, Baca-López, Karol, Gutiérrez, Anllely G., Vázquez-Aguirre, Adriana, Ruiz-Azuara, Lena, Hernández-Lemus, Enrique, Mejía, Carmen
Publicado 2013

Potential Amoebicidal Activity of Hydrazone Derivatives: Synthesis, Characterization, Electrochemical Behavior, Theoretical Study and Evaluation of the Biological Activity

por Toledano-Magaña, Yanis, García-Ramos, Juan Carlos, Navarro-Olivarria, Marisol, Flores-Alamo, Marcos, Manzanera-Estrada, Mayra, Ortiz-Frade, Luis, Galindo-Murillo, Rodrigo, Ruiz-Azuara, Lena, Meléndrez-Luevano, Ruth Ma., Cabrera-Vivas, Blanca M.
Publicado 2015

Efficient fluorescent recognition of ATP/GTP by a water-soluble bisquinolinium pyridine-2,6-dicarboxamide compound. Crystal structures, spectroscopic studies and interaction mode w...

por Viviano-Posadas, Alejandro O., Romero-Mendoza, Ulises, Bazany-Rodríguez, Iván J., Velázquez-Castillo, Rocío V., Martínez-Otero, Diego, Bautista-Renedo, Joanatan M., González-Rivas, Nelly, Galindo-Murillo, Rodrigo, Salomón-Flores, María K., Dorazco-González, Alejandro
Publicado 2022

Defining a conformational ensemble that directs activation of PPARγ

por Chrisman, Ian M., Nemetchek, Michelle D., de Vera, Ian Mitchelle S., Shang, Jinsai, Heidari, Zahra, Long, Yanan, Reyes-Caballero, Hermes, Galindo-Murillo, Rodrigo, Cheatham, Thomas E., Blayo, Anne-Laure, Shin, Youseung, Fuhrmann, Jakob, Griffin, Patrick R., Kamenecka, Theodore M., Kojetin, Douglas J., Hughes, Travis S.
Publicado 2018