Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing

por Gall, Astrid, Morris, Clare, Kellam, Paul, Berry, Neil
Publicado 2014

Accessing Livestock Resources in Ensembl

por Martin, Fergal J., Gall, Astrid, Szpak, Michal, Flicek, Paul
Publicado 2021

Host Genetic Variants and Gene Expression Patterns Associated with Epstein-Barr Virus Copy Number in Lymphoblastoid Cell Lines

por Houldcroft, Charlotte J., Petrova, Velislava, Liu, Jimmy Z., Frampton, Dan, Anderson, Carl A., Gall, Astrid, Kellam, Paul
Publicado 2014

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity

por Wymant, Chris, Hall, Matthew, Ratmann, Oliver, Bonsall, David, Golubchik, Tanya, de Cesare, Mariateresa, Gall, Astrid, Cornelissen, Marion, Fraser, Christophe
Publicado 2018

Scripting Analyses of Genomes in Ensembl Plants

por Contreras-Moreira, Bruno, Naamati, Guy, Rosello, Marc, Allen, James E., Hunt, Sarah E., Muffato, Matthieu, Gall, Astrid, Flicek, Paul
Publicado 2022

Disease progression despite protective HLA expression in an HIV-infected transmission pair

por Brener, Jacqui, Gall, Astrid, Batorsky, Rebecca, Riddell, Lynn, Buus, Soren, Leitman, Ellen, Kellam, Paul, Allen, Todd, Goulder, Philip, Matthews, Philippa C
Publicado 2015

IVA: accurate de novo assembly of RNA virus genomes

por Hunt, Martin, Gall, Astrid, Ong, Swee Hoe, Brener, Jacqui, Ferns, Bridget, Goulder, Philip, Nastouli, Eleni, Keane, Jacqueline A., Kellam, Paul, Otto, Thomas D.
Publicado 2015

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals

por Hoehn, Kenneth B., Gall, Astrid, Bashford-Rogers, Rachael, Fidler, S. J., Kaye, S., Weber, J. N., McClure, M. O., Kellam, Paul, Pybus, Oliver G.
Publicado 2015

Restriction of V3 region sequence divergence in the HIV-1 envelope gene during antiretroviral treatment in a cohort of recent seroconverters

por Gall, Astrid, Kaye, Steve, Hué, Stéphane, Bonsall, David, Rance, Richard, Baillie, Gregory J, Fidler, Sarah J, Weber, Jonathan N, McClure, Myra O, Kellam, Paul
Publicado 2013

Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient

por Brener, Jacqui, Gall, Astrid, Hurst, Jacob, Batorsky, Rebecca, Lavandier, Nora, Chen, Fabian, Edwards, Anne, Bolton, Chrissy, Dsouza, Reena, Allen, Todd, Pybus, Oliver G., Kellam, Paul, Matthews, Philippa C., Goulder, Philip J. R.
Publicado 2018

Disease-associated XMRV sequences are consistent with laboratory contamination

por Hué, Stéphane, Gray, Eleanor R, Gall, Astrid, Katzourakis, Aris, Tan, Choon Ping, Houldcroft, Charlotte J, McLaren, Stuart, Pillay, Deenan, Futreal, Andrew, Garson, Jeremy A, Pybus, Oliver G, Kellam, Paul, Towers, Greg J
Publicado 2010

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

por Langat, Pinky, Raghwani, Jayna, Dudas, Gytis, Bowden, Thomas A., Edwards, Stephanie, Gall, Astrid, Bedford, Trevor, Rambaut, Andrew, Daniels, Rodney S., Russell, Colin A., Pybus, Oliver G., McCauley, John, Kellam, Paul, Watson, Simon J.
Publicado 2017

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

por Ratmann, Oliver, Grabowski, M. Kate, Hall, Matthew, Golubchik, Tanya, Wymant, Chris, Abeler-Dörner, Lucie, Bonsall, David, Hoppe, Anne, Brown, Andrew Leigh, de Oliveira, Tulio, Gall, Astrid, Kellam, Paul, Pillay, Deenan, Kagaayi, Joseph, Kigozi, Godfrey, Quinn, Thomas C., Wawer, Maria J., Laeyendecker, Oliver, Serwadda, David, Gray, Ronald H., Fraser, Christophe
Publicado 2019

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

por Grant, Heather E, Hodcroft, Emma B, Ssemwanga, Deogratius, Kitayimbwa, John M, Yebra, Gonzalo, Esquivel Gomez, Luis Roger, Frampton, Dan, Gall, Astrid, Kellam, Paul, de Oliveira, Tulio, Bbosa, Nicholas, Nsubuga, Rebecca N, Kibengo, Freddie, Kwan, Tsz Ho, Lycett, Samantha, Kao, Rowland, Robertson, David L, Ratmann, Oliver, Fraser, Christophe, Pillay, Deenan, Kaleebu, Pontiano, Leigh Brown, Andrew J
Publicado 2020

Role of HIV-specific CD8(+) T cells in pediatric HIV cure strategies after widespread early viral escape

por Leitman, Ellen M., Thobakgale, Christina F., Adland, Emily, Ansari, M. Azim, Raghwani, Jayna, Prendergast, Andrew J., Tudor-Williams, Gareth, Kiepiela, Photini, Hemelaar, Joris, Brener, Jacqui, Tsai, Ming-Han, Mori, Masahiko, Riddell, Lynn, Luzzi, Graz, Jooste, Pieter, Ndung’u, Thumbi, Walker, Bruce D., Pybus, Oliver G., Kellam, Paul, Naranbhai, Vivek, Matthews, Philippa C., Gall, Astrid, Goulder, Philip J.R.
Publicado 2017

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study

por Cotten, Matthew, Watson, Simon J, Kellam, Paul, Al-Rabeeah, Abdullah A, Makhdoom, Hatem Q, Assiri, Abdullah, Al-Tawfiq, Jaffar A, Alhakeem, Rafat F, Madani, Hossam, AlRabiah, Fahad A, Hajjar, Sami Al, Al-nassir, Wafa N, Albarrak, Ali, Flemban, Hesham, Balkhy, Hanan H, Alsubaie, Sarah, Palser, Anne L, Gall, Astrid, Bashford-Rogers, Rachael, Rambaut, Andrew, Zumla, Alimuddin I, Memish, Ziad A
Publicado 2013

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

por Blanquart, François, Wymant, Chris, Cornelissen, Marion, Gall, Astrid, Bakker, Margreet, Bezemer, Daniela, Hall, Matthew, Hillebregt, Mariska, Ong, Swee Hoe, Albert, Jan, Bannert, Norbert, Fellay, Jacques, Fransen, Katrien, Gourlay, Annabelle J., Grabowski, M. Kate, Gunsenheimer-Bartmeyer, Barbara, Günthard, Huldrych F., Kivelä, Pia, Kouyos, Roger, Laeyendecker, Oliver, Liitsola, Kirsi, Meyer, Laurence, Porter, Kholoud, Ristola, Matti, van Sighem, Ard, Vanham, Guido, Berkhout, Ben, Kellam, Paul, Reiss, Peter, Fraser, Christophe
Publicado 2017

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

por Blanquart, François, Wymant, Chris, Cornelissen, Marion, Gall, Astrid, Bakker, Margreet, Bezemer, Daniela, Hall, Matthew, Hillebregt, Mariska, Ong, Swee Hoe, Albert, Jan, Bannert, Norbert, Fellay, Jacques, Fransen, Katrien, Gourlay, Annabelle J., Grabowski, M. Kate, Gunsenheimer-Bartmeyer, Barbara, Günthard, Huldrych F., Kivelä, Pia, Kouyos, Roger, Laeyendecker, Oliver, Liitsola, Kirsi, Meyer, Laurence, Porter, Kholoud, Ristola, Matti, van Sighem, Ard, Vanham, Guido, Berkhout, Ben, Kellam, Paul, Reiss, Peter, Fraser, Christophe
Publicado 2017

The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data

por De Silva, Nishadi H, Bhai, Jyothish, Chakiachvili, Marc, Contreras-Moreira, Bruno, Cummins, Carla, Frankish, Adam, Gall, Astrid, Genez, Thiago, Howe, Kevin L, Hunt, Sarah E, Martin, Fergal J, Moore, Benjamin, Ogeh, Denye, Parker, Anne, Parton, Andrew, Ruffier, Magali, Sakthivel, Manoj Pandian, Sheppard, Dan, Tate, John, Thormann, Anja, Thybert, David, Trevanion, Stephen J, Winterbottom, Andrea, Zerbino, Daniel R, Finn, Robert D, Flicek, Paul, Yates, Andrew D
Publicado 2021

Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load

por Zhao, Lele, Wymant, Chris, Blanquart, François, Golubchik, Tanya, Gall, Astrid, Bakker, Margreet, Bezemer, Daniela, Hall, Matthew, Ong, Swee Hoe, Albert, Jan, Bannert, Norbert, Fellay, Jacques, Grabowski, M Kate, Gunsenheimer-Bartmeyer, Barbara, Günthard, Huldrych F, Kivelä, Pia, Kouyos, Roger D, Laeyendecker, Oliver, Meyer, Laurence, Porter, Kholoud, van Sighem, Ard, van der Valk, Marc, Berkhout, Ben, Kellam, Paul, Cornelissen, Marion, Reiss, Peter, Fraser, Christophe, Ferretti, Luca
Publicado 2022