Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing Escherichia coli in New South Wales, Australia

por Sim, Eby M., Kim, Ryan, Gall, Mailie, Arnott, Alicia, Howard, Peter, Valcanis, Mary, Howden, Benjamin P., Sintchenko, Vitali
Publicado 2021

Exploring programmatic indicators of tuberculosis control that incorporate routine Mycobacterium tuberculosis sequencing in low incidence settings: a comprehensive (2017–2021) pati...

por Zhang, Xiaomei, Martinez, Elena, Lam, Connie, Crighton, Taryn, Sim, Eby, Gall, Mailie, Donnan, Ellen J., Marais, Ben J., Sintchenko, Vitali
Publicado 2023

SARS-CoV-2 Within-Host and in vitro Genomic Variability and Sub-Genomic RNA Levels Indicate Differences in Viral Expression Between Clinical Cohorts and in vitro Culture

por Agius, Jessica E., Johnson-Mackinnon, Jessica C., Fong, Winkie, Gall, Mailie, Lam, Connie, Basile, Kerri, Kok, Jen, Arnott, Alicia, Sintchenko, Vitali, Rockett, Rebecca J.
Publicado 2022

Emergent Omicron BR.2.1 sublineage of SARS-CoV-2 in New South Wales, Australia: a subvariant with high fitness but without increased disease severity

por Howard-Jones, Annaleise R, Arnott, Alicia, Draper, Jenny, Gall, Mailie, Ellis, Sally, Marris, Kelsi, Selvey, Christine, Basile, Kerri, Dwyer, Dominic E, Sintchenko, Vitali, Kok, Jen
Publicado 2023

Whole Genome Sequencing Shows Genetic Diversity, as Well as Clonal Complex and Gene Polymorphisms Associated with Fluconazole Non-Susceptible Isolates of Candida tropicalis

por Keighley, Caitlin, Gall, Mailie, van Hal, Sebastiaan J., Halliday, Catriona L., Chai, Louis Yi Ann, Chew, Kean Lee, Biswas, Chayanika, Slavin, Monica A., Meyer, Wieland, Sintchenko, Vitali, Chen, Sharon C. A.
Publicado 2022

Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection

por Suster, Carl J. E., Arnott, Alicia, Blackwell, Grace, Gall, Mailie, Draper, Jenny, Martinez, Elena, Drew, Alexander P., Rockett, Rebecca J., Chen, Sharon C.-A., Kok, Jen, Dwyer, Dominic E., Sintchenko, Vitali
Publicado 2022

Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis

por Luo, Lijuan, Payne, Michael, Wang, Qinning, Kaur, Sandeep, Rathnayake, Irani U., Graham, Rikki, Gall, Mailie, Draper, Jenny, Martinez, Elena, Octavia, Sophie, Tanaka, Mark M., Jennison, Amy V., Sintchenko, Vitali, Lan, Ruiting
Publicado 2023

Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia

por Arnott, Alicia, Draper, Jenny, Rockett, Rebecca J., Lam, Connie, Sadsad, Rosemarie, Gall, Mailie, Martinez, Elena, Byun, Roy, Musto, Jennie, Marais, Ben, Chen, Sharon C.-A., Kok, Jen, Dwyer, Dominic E., Sintchenko, Vitali
Publicado 2021

SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes

por Fong, Winkie, Rockett, Rebecca J., Agius, Jessica E., Chandra, Shona, Johnson-Mckinnon, Jessica, Sim, Eby, Lam, Connie, Arnott, Alicia, Gall, Mailie, Draper, Jenny, Maddocks, Susan, Chen, Sharon, Kok, Jen, Dwyer, Dominic, O’Sullivan, Matthew, Sintchenko, Vitali
Publicado 2023

Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use

por Rockett, Rebecca, Basile, Kerri, Maddocks, Susan, Fong, Winkie, Agius, Jessica E., Johnson-Mackinnon, Jessica, Arnott, Alicia, Chandra, Shona, Gall, Mailie, Draper, Jenny, Martinez, Elena, Sim, Eby M., Lee, Clement, Ngo, Christine, Ramsperger, Marc, Ginn, Andrew N., Wang, Qinning, Fennell, Michael, Ko, Danny, Lim, H. Ling, Gilroy, Nicky, O’Sullivan, Matthew V.N., Chen, Sharon C.-A., Kok, Jen, Dwyer, Dominic E., Sintchenko, Vitali
Publicado 2022

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance

por Rockett, Rebecca J., Draper, Jenny, Gall, Mailie, Sim, Eby M., Arnott, Alicia, Agius, Jessica E., Johnson-Mackinnon, Jessica, Fong, Winkie, Martinez, Elena, Drew, Alexander P., Lee, Clement, Ngo, Christine, Ramsperger, Marc, Ginn, Andrew N., Wang, Qinning, Fennell, Michael, Ko, Danny, Hueston, Linda, Kairaitis, Lukas, Holmes, Edward C., O’Sullivan, Matthew N., Chen, Sharon C.-A., Kok, Jen, Dwyer, Dominic E., Sintchenko, Vitali
Publicado 2022

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

por O'Toole, Áine, Hill, Verity, Pybus, Oliver G., Watts, Alexander, Bogoch, Issac I., Khan, Kamran, Messina, Jane P., Tegally, Houriiyah, Lessells, Richard R., Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L., de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E., Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S., Vasanthapuram, Ravi, Schulz, Thomas F., Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S., Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Arnott, Alicia, Draper, Jenny, Gall, Mailie, Rawlinson, William, Deveson, Ira, Schlebusch, Sanmarié, McMahon, Jamie, Leong, Lex, Lim, Chuan Kok, Chironna, Maria, Loconsole, Daniela, Bal, Antonin, Josset, Laurence, Holmes, Edward, St. George, Kirsten, Lasek-Nesselquist, Erica, Sikkema, Reina S., Oude Munnink, Bas, Koopmans, Marion, Brytting, Mia, Sudha rani, V., Pavani, S., Smura, Teemu, Heim, Albert, Kurkela, Satu, Umair, Massab, Salman, Muhammad, Bartolini, Barbara, Rueca, Martina, Drosten, Christian, Wolff, Thorsten, Silander, Olin, Eggink, Dirk, Reusken, Chantal, Vennema, Harry, Park, Aekyung, Carrington, Christine, Sahadeo, Nikita, Carr, Michael, Gonzalez, Gabo, de Oliveira, Tulio, Faria, Nuno, Rambaut, Andrew, Kraemer, Moritz U. G.
Publicado 2021