Epiphany: predicting Hi-C contact maps from 1D epigenomic signals

por Yang, Rui, Das, Arnav, Gao, Vianne R., Karbalayghareh, Alireza, Noble, William S., Bilmes, Jeffery A., Leslie, Christina S.
Publicado 2023

Protocol to dissociate, process, and analyze the human lung tissue using single-cell RNA-seq

por Quintanal-Villalonga, Álvaro, Chan, Joseph M., Masilionis, Ignas, Gao, Vianne Ran, Xie, Yubin, Allaj, Viola, Chow, Andrew, Poirier, John T., Pe’er, Dana, Rudin, Charles M., Mazutis, Linas
Publicado 2022

Drivers of heterogeneity in synovial fibroblasts in rheumatoid arthritis

por Smith, Melanie H., Gao, Vianne R., Periyakoil, Preethi K., Kochen, Alejandro, DiCarlo, Edward F., Goodman, Susan M., Norman, Thomas M., Donlin, Laura T., Leslie, Christina S., Rudensky, Alexander Y.
Publicado 2023

A non-invasive artificial intelligence approach for the prediction of human blastocyst ploidy: a retrospective model development and validation study

por Barnes, Josue, Brendel, Matthew, Gao, Vianne R, Rajendran, Suraj, Kim, Junbum, Li, Qianzi, Malmsten, Jonas E, Sierra, Jose T, Zisimopoulos, Pantelis, Sigaras, Alexandros, Khosravi, Pegah, Meseguer, Marcos, Zhan, Qiansheng, Rosenwaks, Zev, Elemento, Olivier, Zaninovic, Nikica, Hajirasouliha, Iman
Publicado 2023

Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis

por Burdziak, Cassandra, Alonso-Curbelo, Direna, Walle, Thomas, Reyes, José, Barriga, Francisco M., Haviv, Doron, Xie, Yubin, Zhao, Zhen, Zhao, Chujun Julia, Chen, Hsuan-An, Chaudhary, Ojasvi, Masilionis, Ignas, Choo, Zi-Ning, Gao, Vianne, Luan, Wei, Wuest, Alexandra, Ho, Yu-Jui, Wei, Yuhong, Quail, Daniela F, Koche, Richard, Mazutis, Linas, Chaligné, Ronan, Nawy, Tal, Lowe, Scott W., Pe’er, Dana
Publicado 2023

ChromaFold predicts the 3D contact map from single-cell chromatin accessibility

por Gao, Vianne R., Yang, Rui, Das, Arnav, Luo, Renhe, Luo, Hanzhi, McNally, Dylan R., Karagiannidis, Ioannis, Rivas, Martin A., Wang, Zhong-Min, Barisic, Darko, Karbalayghareh, Alireza, Wong, Wilfred, Zhan, Yingqian A., Chin, Christopher R., Noble, William, Bilmes, Jeff A., Apostolou, Effie, Kharas, Michael G., Béguelin, Wendy, Viny, Aaron D., Huangfu, Danwei, Rudensky, Alexander Y., Melnick, Ari M., Leslie, Christina S.
Publicado 2023

Tumor Microenvironment-Derived NRG1 Promotes Antiandrogen Resistance in Prostate Cancer

por Zhang, Zeda, Karthaus, Wouter R., Lee, Young Sun, Gao, Vianne R., Wu, Chao, Russo, Joshua W., Liu, Menghan, Mota, Jose Mauricio, Abida, Wassim, Linton, Eliot, Lee, Eugine, Barnes, Spencer D., Chen, Hsuan-An, Mao, Ninghui, Wongvipat, John, Choi, Danielle, Chen, Xiaoping, Zhao, Huiyong, Manova-Todorova, Katia, de Stanchina, Elisa, Taplin, Mary-Ellen, Balk, Steven P., Rathkopf, Dana E., Gopalan, Anuradha, Carver, Brett S., Mu, Ping, Jiang, Xuejun, Watson, Philip A., Sawyers, Charles L.
Publicado 2020