OpenCOR: a modular and interoperable approach to computational biology

por Garny, Alan, Hunter, Peter J.
Publicado 2015

CellML 2.0.1

por Clerx, Michael, Cooling, Michael T., Cooper, Jonathan, Garny, Alan, Moyle, Keri, Nickerson, David P., Nielsen, Poul M. F., Sorby, Hugh
Publicado 2023

Electrotonic suppression of early afterdepolarizations in the neonatal rat ventricular myocyte monolayer

por Himel, Herman D, Garny, Alan, Noble, Penelope J, Wadgoankar, Raj, Savarese, Joseph, Liu, Nian, Bub, Gil, El-Sherif, Nabil
Publicado 2013

Three-dimensional histology: tools and application to quantitative assessment of cell-type distribution in rabbit heart

por Burton, Rebecca A.B., Lee, Peter, Casero, Ramón, Garny, Alan, Siedlecka, Urszula, Schneider, Jürgen E., Kohl, Peter, Grau, Vicente
Publicado 2014

CellML 2.0

por Clerx, Michael, Cooling, Michael T., Cooper, Jonathan, Garny, Alan, Moyle, Keri, Nickerson, David P., Nielsen, Poul M. F., Sorby, Hugh
Publicado 2020

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4

por Smith, Lucian P., Bergmann, Frank T., Garny, Alan, Helikar, Tomáš, Karr, Jonathan, Nickerson, David, Sauro, Herbert, Waltemath, Dagmar, König, Matthias
Publicado 2021

An overview of the CellML API and its implementation

por Miller, Andrew K, Marsh, Justin, Reeve, Adam, Garny, Alan, Britten, Randall, Halstead, Matt, Cooper, Jonathan, Nickerson, David P, Nielsen, Poul F
Publicado 2010

Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative

por Hucka, Michael, Nickerson, David P., Bader, Gary D., Bergmann, Frank T., Cooper, Jonathan, Demir, Emek, Garny, Alan, Golebiewski, Martin, Myers, Chris J., Schreiber, Falk, Waltemath, Dagmar, Le Novère, Nicolas
Publicado 2015

Revision history aware repositories of computational models of biological systems

por Miller, Andrew K, Yu, Tommy, Britten, Randall, Cooling, Mike T, Lawson, James, Cowan, Dougal, Garny, Alan, Halstead, Matt DB, Hunter, Peter J, Nickerson, David P, Nunns, Geo, Wimalaratne, Sarala M, F Nielsen, Poul M
Publicado 2011

CellML metadata standards, associated tools and repositories

por Beard, Daniel A., Britten, Randall, Cooling, Mike T., Garny, Alan, Halstead, Matt D.B., Hunter, Peter J., Lawson, James, Lloyd, Catherine M., Marsh, Justin, Miller, Andrew, Nickerson, David P., Nielsen, Poul M.F., Nomura, Taishin, Subramanium, Shankar, Wimalaratne, Sarala M., Yu, Tommy
Publicado 2009

Minimum Information About a Simulation Experiment (MIASE)

por Waltemath, Dagmar, Adams, Richard, Beard, Daniel A., Bergmann, Frank T., Bhalla, Upinder S., Britten, Randall, Chelliah, Vijayalakshmi, Cooling, Michael T., Cooper, Jonathan, Crampin, Edmund J., Garny, Alan, Hoops, Stefan, Hucka, Michael, Hunter, Peter, Klipp, Edda, Laibe, Camille, Miller, Andrew K., Moraru, Ion, Nickerson, David, Nielsen, Poul, Nikolski, Macha, Sahle, Sven, Sauro, Herbert M., Schmidt, Henning, Snoep, Jacky L., Tolle, Dominic, Wolkenhauer, Olaf, Le Novère, Nicolas
Publicado 2011

Harmonizing semantic annotations for computational models in biology

por Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

BioSimulators: a central registry of simulation engines and services for recommending specific tools

por Shaikh, Bilal, Smith, Lucian P, Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S, Anwar, Azraf, Beber, Moritz E, Bergmann, Frank T, Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G Bard, Faeder, James R, Freiburger, Andrew P, Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H, Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hasenauer, Jan, Hellerstein, Joseph L, Hermjakob, Henning, Hoops, Stefan, Ison, Jon C, Jahn, Diego, Jakubowski, Henry V, Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Sheriff, Rahuman S Malik, Mandal, Synchon, McDougal, Robert, Medley, J Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J, Naldi, Aurelien, Nguyen, Tung V N, Nickerson, David P, Olivier, Brett G, Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R, Priya, Ankita, Rampadarath, Anand K, Rohwer, Johann M, Saglam, Ali S, Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J, van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P, Schaff, James C, Blinov, Michael L, Sauro, Herbert M, Moraru, Ion I, Karr, Jonathan R
Publicado 2022