mmannot: How to improve small–RNA annotation?

por Zytnicki, Matthias, Gaspin, Christine
Publicado 2020

srnaMapper: an optimal mapping tool for sRNA-Seq reads

por Zytnicki, Matthias, Gaspin, Christine
Publicado 2022

Distribution of short interstitial telomere motifs in two plant genomes: putative origin and function

por Gaspin, Christine, Rami, Jean-François, Lescure, Bernard
Publicado 2010

LeARN: a platform for detecting, clustering and annotating non-coding RNAs

por Noirot, Céline, Gaspin, Christine, Schiex, Thomas, Gouzy, Jérôme
Publicado 2008

MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring

por Homberg, Nicolas, Galvão Ferrarini, Mariana, Gaspin, Christine, Sagot, Marie-France
Publicado 2023

Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data

por Higashi, Susan, Fournier, Cyril, Gautier, Christian, Gaspin, Christine, Sagot, Marie-France
Publicado 2015

RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

por Grosjean, Henri, Gaspin, Christine, Marck, Christian, Decatur, Wayne A, de Crécy-Lagard, Valérie
Publicado 2008

Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks

por Thébault, Patricia, Bourqui, Romain, Benchimol, William, Gaspin, Christine, Sirand-Pugnet, Pascal, Uricaru, Raluca, Dutour, Isabelle
Publicado 2015

Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

por Juanchich, Amelie, Bardou, Philippe, Rué, Olivier, Gabillard, Jean-Charles, Gaspin, Christine, Bobe, Julien, Guiguen, Yann
Publicado 2016

Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001

por Caldelari, Isabelle, Chane-Woon-Ming, Béatrice, Noirot, Céline, Moreau, Karen, Romby, Pascale, Gaspin, Christine, Marzi, Stefano
Publicado 2017

Phylodynamic study of the conserved RNA structure encompassing the hemagglutinin cleavage site encoding region of H5 and H7 low pathogenic avian influenza viruses

por Dupré, Gabriel, Hoede, Claire, Figueroa, Thomas, Bessière, Pierre, Bertagnoli, Stéphane, Ducatez, Mariette, Gaspin, Christine, Volmer, Romain
Publicado 2021

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

por Phok, Kounthéa, Moisan, Annick, Rinaldi, Dana, Brucato, Nicolas, Carpousis, Agamemnon J, Gaspin, Christine, Clouet-d'Orval, Béatrice
Publicado 2011

Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates

por Esquerré, Thomas, Moisan, Annick, Chiapello, Hélène, Arike, Liisa, Vilu, Raivo, Gaspin, Christine, Cocaign-Bousquet, Muriel, Girbal, Laurence
Publicado 2015

Jflow: a workflow management system for web applications

por Mariette, Jérôme, Escudié, Frédéric, Bardou, Philippe, Nabihoudine, Ibouniyamine, Noirot, Céline, Trotard, Marie-Stéphane, Gaspin, Christine, Klopp, Christophe
Publicado 2016

Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing

por Fuchs, Steffen, Babin, Loélia, Andraos, Elissa, Bessiere, Chloé, Willier, Semjon, Schulte, Johannes H., Gaspin, Christine, Meggetto, Fabienne
Publicado 2022

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

por Beaume, Marie, Hernandez, David, Farinelli, Laurent, Deluen, Cécile, Linder, Patrick, Gaspin, Christine, Romby, Pascale, Schrenzel, Jacques, Francois, Patrice
Publicado 2010

Listeriomics: an Interactive Web Platform for Systems Biology of Listeria

por Bécavin, Christophe, Koutero, Mikael, Tchitchek, Nicolas, Cerutti, Franck, Lechat, Pierre, Maillet, Nicolas, Hoede, Claire, Chiapello, Hélène, Gaspin, Christine, Cossart, Pascale
Publicado 2017

Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes

por Belkorchia, Abdel, Pombert, Jean-François, Polonais, Valérie, Parisot, Nicolas, Delbac, Frédéric, Brugère, Jean-François, Peyret, Pierre, Gaspin, Christine, Peyretaillade, Eric
Publicado 2017

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

por Cerutti, Franck, Mallet, Ludovic, Painset, Anaïs, Hoede, Claire, Moisan, Annick, Bécavin, Christophe, Duval, Mélodie, Dussurget, Olivier, Cossart, Pascale, Gaspin, Christine, Chiapello, Hélène
Publicado 2017

Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria (Mollicutes)

por Ipoutcha, Thomas, Tsarmpopoulos, Iason, Talenton, Vincent, Gaspin, Christine, Moisan, Annick, Walker, Caray A., Brownlie, Joe, Blanchard, Alain, Thebault, Patricia, Sirand-Pugnet, Pascal
Publicado 2019