Computing nearest neighbour interchange distances between ranked phylogenetic trees

por Collienne, Lena, Gavryushkin, Alex
Publicado 2021

The combinatorics of discrete time-trees: theory and open problems

por Gavryushkin, Alex, Whidden, Chris, Matsen, Frederick A.
Publicado 2017

Inferring genetic interactions from comparative fitness data

por Crona, Kristina, Gavryushkin, Alex, Greene, Devin, Beerenwinkel, Niko
Publicado 2017

A fast lasso-based method for inferring higher-order interactions

por Elmes, Kieran, Heywood, Astra, Huang, Zhiyi, Gavryushkin, Alex
Publicado 2022

The geometry of partial fitness orders and an efficient method for detecting genetic interactions

por Lienkaemper, Caitlin, Lamberti, Lisa, Drain, James, Beerenwinkel, Niko, Gavryushkin, Alex
Publicado 2018

Discrete coalescent trees

por Collienne, Lena, Elmes, Kieran, Fischer, Mareike, Bryant, David, Gavryushkin, Alex
Publicado 2021

Learning epistatic gene interactions from perturbation screens

por Elmes, Kieran, Schmich, Fabian, Szczurek, Ewa, Jenkins, Jeremy, Beerenwinkel, Niko, Gavryushkin, Alex
Publicado 2021

Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution

por Chen, Kylie, Moravec, Jiří C, Gavryushkin, Alex, Welch, David, Drummond, Alexei J
Publicado 2022

Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data

por Moravec, Jiří C., Lanfear, Robert, Spector, David L., Diermeier, Sarah D., Gavryushkin, Alex
Publicado 2023

How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?

por Stadler, Tanja, Vaughan, Timothy G., Gavryushkin, Alex, Guindon, Stephane, Kühnert, Denise, Leventhal, Gabriel E., Drummond, Alexei J.
Publicado 2015

Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software

por Gardner, Paul P., Paterson, James M., McGimpsey, Stephanie, Ashari-Ghomi, Fatemeh, Umu, Sinan U., Pawlik, Aleksandra, Gavryushkin, Alex, Black, Michael A.
Publicado 2022

Microbiome interactions shape host fitness

por Gould, Alison L., Zhang, Vivian, Lamberti, Lisa, Jones, Eric W., Obadia, Benjamin, Korasidis, Nikolaos, Gavryushkin, Alex, Carlson, Jean M., Beerenwinkel, Niko, Ludington, William B.
Publicado 2018

Tuberous sclerosis complex: a complex case

por Powell, Ryan M., Pattison, Sharon, Moravec, Jiri C., Bhat, Basharat, Guirguis, Nada, Markie, David, Jones, Greg T., Copedo, Jason, Print, Cristin G., Morison, Ian M., Gavryushkin, Alex, Gray, Bronwyn, Wyeth, Lisa J., Eccles, Mike R., Macaulay, Erin C.
Publicado 2022