MechRNA: prediction of lncRNA mechanisms from RNA–RNA and RNA–protein interactions

por Gawronski, Alexander R, Uhl, Michael, Zhang, Yajia, Lin, Yen-Yi, Niknafs, Yashar S, Ramnarine, Varune R, Malik, Rohit, Feng, Felix, Chinnaiyan, Arul M, Collins, Colin C, Sahinalp, S Cenk, Backofen, Rolf
Publicado 2018

Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA

por Gawroński, Alexander R, Lin, Yen-Yi, McConeghy, Brian, LeBihan, Stephane, Asghari, Hossein, Koçkan, Can, Orabi, Baraa, Adra, Nabil, Pili, Roberto, Collins, Colin C, Sahinalp, S Cenk, Hach, Faraz
Publicado 2019

Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression

por Zhang, Yajia, Pitchiaya, Sethuramasundaram, Cieślik, Marcin, Niknafs, Yashar S., Tien, Jean C-Y., Hosono, Yasuyuki, Iyer, Matthew K., Yazdani, Sahr, Subramaniam, Shruthi, Shukla, Sudhanshu K., Jiang, Xia, Wang, Lisha, Liu, Tzu-Ying, Uhl, Michael, Gawronski, Alexander R., Qiao, Yuanyuan, Xiao, Lanbo, Dhanasekaran, Saravana M., Juckette, Kristin M., Kunju, Lakshmi P., Cao, Xuhong, Patel, Utsav, Batish, Mona, Shukla, Girish C., Paulsen, Michelle T., Ljungman, Mats, Jiang, Hui, Mehra, Rohit, Backofen, Rolf, Sahinalp, Cenk S., Freier, Susan M., Watt, Andrew T., Guo, Shuling, Wei, John T., Feng, Felix Y., Malik, Rohit, Chinnaiyan, Arul M.
Publicado 2018