The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment

por Raden, Martin, Müller, Teresa, Mautner, Stefan, Gelhausen, Rick, Backofen, Rolf
Publicado 2020

uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames

por Scholz, Anica, Eggenhofer, Florian, Gelhausen, Rick, Grüning, Björn, Zarnack, Kathi, Brüne, Bernhard, Backofen, Rolf, Schmid, Tobias
Publicado 2019

RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria

por Gelhausen, Rick, Müller, Teresa, Svensson, Sarah L, Alkhnbashi, Omer S, Sharma, Cynthia M, Eggenhofer, Florian, Backofen, Rolf
Publicado 2022

HRIBO: high-throughput analysis of bacterial ribosome profiling data

por Gelhausen, Rick, Svensson, Sarah L, Froschauer, Kathrin, Heyl, Florian, Hadjeras, Lydia, Sharma, Cynthia M, Eggenhofer, Florian, Backofen, Rolf
Publicado 2020

Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics

por Hadjeras, Lydia, Heiniger, Benjamin, Maaß, Sandra, Scheuer, Robina, Gelhausen, Rick, Azarderakhsh, Saina, Barth-Weber, Susanne, Backofen, Rolf, Becher, Dörte, Ahrens, Christian H, Sharma, Cynthia M, Evguenieva-Hackenberg, Elena
Publicado 2023

Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimized mass spectrometry

por Hadjeras, Lydia, Bartel, Jürgen, Maier, Lisa-Katharina, Maaß, Sandra, Vogel, Verena, Svensson, Sarah L, Eggenhofer, Florian, Gelhausen, Rick, Müller, Teresa, Alkhnbashi, Omer S, Backofen, Rolf, Becher, Dörte, Sharma, Cynthia M, Marchfelder, Anita
Publicado 2023

A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence

por Venturini, Elisa, Svensson, Sarah L, Maaß, Sandra, Gelhausen, Rick, Eggenhofer, Florian, Li, Lei, Cain, Amy K, Parkhill, Julian, Becher, Dörte, Backofen, Rolf, Barquist, Lars, Sharma, Cynthia M, Westermann, Alexander J, Vogel, Jörg
Publicado 2020

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

por Raden, Martin, Ali, Syed M, Alkhnbashi, Omer S, Busch, Anke, Costa, Fabrizio, Davis, Jason A, Eggenhofer, Florian, Gelhausen, Rick, Georg, Jens, Heyne, Steffen, Hiller, Michael, Kundu, Kousik, Kleinkauf, Robert, Lott, Steffen C, Mohamed, Mostafa M, Mattheis, Alexander, Miladi, Milad, Richter, Andreas S, Will, Sebastian, Wolff, Joachim, Wright, Patrick R, Backofen, Rolf
Publicado 2018