Discovering Biological Progression Underlying Microarray Samples

por Qiu, Peng, Gentles, Andrew J., Plevritis, Sylvia K.
Publicado 2011

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

por Kohany, Oleksiy, Gentles, Andrew J, Hankus, Lukasz, Jurka, Jerzy
Publicado 2006

Identifying Network Perturbation in Cancer

por Grechkin, Maxim, Logsdon, Benjamin A., Gentles, Andrew J., Lee, Su-In
Publicado 2016

An LSC epigenetic signature is largely mutation independent and implicates the HOXA cluster in AML pathogenesis

por Jung, Namyoung, Dai, Bo, Gentles, Andrew J., Majeti, Ravindra, Feinberg, Andrew P.
Publicado 2015

Boolean implication networks derived from large scale, whole genome microarray datasets

por Sahoo, Debashis, Dill, David L, Gentles, Andrew J, Tibshirani, Robert, Plevritis, Sylvia K
Publicado 2008

Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response

por Champion, Magali, Brennan, Kevin, Croonenborghs, Tom, Gentles, Andrew J., Pochet, Nathalie, Gevaert, Olivier
Publicado 2017

Prognostic Gene Expression, Stemness and Immune Microenvironment in Pediatric Tumors

por Stahl, David, Knoll, Rainer, Gentles, Andrew J., Vokuhl, Christian, Buness, Andreas, Gütgemann, Ines
Publicado 2021

Data normalization considerations for digital tumor dissection

por Newman, Aaron M., Gentles, Andrew J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Publicado 2017

Brd4 regulates the expression of essential autophagy genes and Keap1 in AML cells

por Huang, Min, Zhu, Li, Garcia, Jacqueline S., Li, Michael X., Gentles, Andrew J., Mitchell, Beverly S.
Publicado 2018

Low BUB1 expression is an adverse prognostic marker in gastric adenocarcinoma

por Stahl, David, Braun, Martin, Gentles, Andrew J., Lingohr, Philipp, Walter, Adeline, Kristiansen, Glen, Gütgemann, Ines
Publicado 2017

Clonal architecture predicts clinical outcomes and drug sensitivity in acute myeloid leukemia

por Benard, Brooks A., Leak, Logan B., Azizi, Armon, Thomas, Daniel, Gentles, Andrew J., Majeti, Ravindra
Publicado 2021

Peripheral blood DNA methylation profiles predict future development of B-cell Non-Hodgkin Lymphoma

por Espín-Pérez, Almudena, Brennan, Kevin, Ediriwickrema, Asiri Saumya, Gevaert, Olivier, Lossos, Izidore S., Gentles, Andrew J.
Publicado 2022

Sparse expression bases in cancer reveal tumor drivers

por Logsdon, Benjamin A., Gentles, Andrew J., Miller, Chris P., Blau, C. Anthony, Becker, Pamela S., Lee, Su-In
Publicado 2015

NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma

por Brennan, Kevin, Shin, June Ho, Tay, Joshua K., Prunello, Marcos, Gentles, Andrew J., Sunwoo, John B., Gevaert, Olivier
Publicado 2017

High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE

por Vahid, Milad R., Brown, Erin L., Steen, Chloé B., Zhang, Wubing, Jeon, Hyun Soo, Kang, Minji, Gentles, Andrew J., Newman, Aaron M.
Publicado 2023

NSD1 mutations deregulate transcription and DNA methylation of bivalent developmental genes in Sotos syndrome

por Brennan, Kevin, Zheng, Hong, Fahrner, Jill A, Shin, June Ho, Gentles, Andrew J, Schaefer, Bradley, Sunwoo, John B, Bernstein, Jonathan A, Gevaert, Olivier
Publicado 2022

Robust enumeration of cell subsets from tissue expression profiles

por Newman, Aaron M., Liu, Chih Long, Green, Michael R., Gentles, Andrew J., Feng, Weiguo, Xu, Yue, Hoang, Chuong D., Diehn, Maximilian, Alizadeh, Ash A.
Publicado 2015

Loss of p53-DREAM-mediated repression of cell cycle genes as a driver of lymph node metastasis in head and neck cancer

por Brennan, Kevin, Espín-Pérez, Almudena, Chang, Serena, Bedi, Nikita, Saumyaa, Saumyaa, Shin, June Ho, Plevritis, Sylvia K., Gevaert, Olivier, Sunwoo, John B., Gentles, Andrew J.
Publicado 2023

Determining cell-type abundance and expression from bulk tissues with digital cytometry

por Newman, Aaron M., Steen, Chloé B., Liu, Chih Long, Gentles, Andrew J., Chaudhuri, Aadel A., Scherer, Florian, Khodadoust, Michael S., Esfahani, Mohammad S., Luca, Bogdan A., Steiner, David, Diehn, Maximilian, Alizadeh, Ash A.
Publicado 2019

HGAL inhibits lymphoma dissemination by interacting with multiple cytoskeletal proteins

por Jiang, Xiaoyu, Lu, XiaoQing, Gentles, Andrew J., Zhao, Dekuang, Wander, Seth A., Zhang, Yu, Natkunam, Yasodha, Slingerland, Joyce, Reis, Isildinha M., Rabinovich, Brian, Abdulreda, Midhat H., Moy, Vincent T., Lossos, Izidore S.
Publicado 2021