A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

por Abrams, Douglas, Kumar, Parveen, Karuturi, R. Krishna Murthy, George, Joshy
Publicado 2019

Computational inference of a genomic pluripotency signature in human and mouse stem cells

por Kurum, Esra, Benayoun, Bérénice A., Malhotra, Ankit, George, Joshy, Ucar, Duygu
Publicado 2016

multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

por Lawlor, Nathan, Fabbri, Alec, Guan, Peiyong, George, Joshy, Karuturi, R. Krishna Murthy
Publicado 2016

3D patient-derived tumor models to recapitulate pediatric brain tumors In Vitro

por Tang-Schomer, Min D., Chandok, Harshpreet, Wu, Wei-Biao, Lau, Ching C., Bookland, Markus J., George, Joshy
Publicado 2022

Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells

por George, Joshy, Uyar, Asli, Young, Kira, Kuffler, Lauren, Waldron-Francis, Kaiden, Marquez, Eladio, Ucar, Duygu, Trowbridge, Jennifer J.
Publicado 2016

Single-cell transcriptomes identify human islet cell signatures and reveal cell-type–specific expression changes in type 2 diabetes

por Lawlor, Nathan, George, Joshy, Bolisetty, Mohan, Kursawe, Romy, Sun, Lili, Sivakamasundari, V., Kycia, Ina, Robson, Paul, Stitzel, Michael L.
Publicado 2017

OTME-10. Integrated analysis of human gliomas at the single cell level identifies S100A4 as a novel immunotherapy target

por Abdelfattah, Nourhan, Kumar, Parveen, Leu, Jia-Shiun, Flynn, William, Baskin, David, Ptichumani, Kumar, Ijare, Omkar, George, Joshy, Yun, Kyuson
Publicado 2021

Multiplex immunofluorescence-guided laser capture microdissection for spatial transcriptomics of metastatic melanoma tissues

por Martinek, Jan, Wu, Te-Chia, Sun, Lili, Lin, Jianan, Kim, Kyung In, Marches, Florentina, Robson, Paul, George, Joshy, Palucka, Karolina
Publicado 2022

Amplicon-Dependent CCNE1 Expression Is Critical for Clonogenic Survival after Cisplatin Treatment and Is Correlated with 20q11 Gain in Ovarian Cancer

por Etemadmoghadam, Dariush, George, Joshy, Cowin, Prue A., Cullinane, Carleen, Kansara, Maya, Gorringe, Kylie L., Smyth, Gordon K., Bowtell, David D. L.
Publicado 2010

Local versus systemic control of bone and skeletal muscle mass by components of the transforming growth factor-β signaling pathway

por Liu, Yewei, Lehar, Adam, Rydzik, Renata, Chandok, Harshpreet, Lee, Yun-Sil, Youngstrom, Daniel W., George, Joshy, Matzuk, Martin M., Germain-Lee, Emily L., Lee, Se-Jin
Publicado 2021

Host Gene Expression Profiling of Dengue Virus Infection in Cell Lines and Patients

por Fink, Joshua, Gu, Feng, Ling, Ling, Tolfvenstam, Thomas, Olfat, Farzad, Chin, Keh Chuang, Aw, Pauline, George, Joshy, Kuznetsov, Vladimir A., Schreiber, Mark, Vasudevan, Subhash G., Hibberd, Martin L.
Publicado 2007

Harnessing large language models (LLMs) for candidate gene prioritization and selection

por Toufiq, Mohammed, Rinchai, Darawan, Bettacchioli, Eleonore, Kabeer, Basirudeen Syed Ahamed, Khan, Taushif, Subba, Bishesh, White, Olivia, Yurieva, Marina, George, Joshy, Jourde-Chiche, Noemie, Chiche, Laurent, Palucka, Karolina, Chaussabel, Damien
Publicado 2023

SFRP4 drives invasion in gastric cancer and is an early predictor of recurrence

por Busuttil, Rita A., George, Joshy, House, Colin M., Lade, Stephen, Mitchell, Catherine, Di Costanzo, Natasha S., Pattison, Sharon, Huang, Yu-Kuan, Tan, Patrick, Cheong, Jae-Ho, Rha, Sun Young, Boussioutas, Alex
Publicado 2020

Genomewide Expression Analysis in Zebrafish mind bomb Alleles with Pancreas Defects of Different Severity Identifies Putative Notch Responsive Genes

por Hegde, Ashok, Qiu, Nick Chuanxin, Qiu, Xuehui, Ho, Steven Hao-Kee, Tay, Kenny Qi-Ye, George, Joshy, Ng, Felicia Soo Lee, Govindarajan, Kunde Ramamoorthy, Gong, Zhiyuan, Mathavan, Sinnakaruppan, Jiang, Yun-Jin
Publicado 2008

The chromatin accessibility signature of human immune aging stems from CD8(+) T cells

por Ucar, Duygu, Márquez, Eladio J., Chung, Cheng-Han, Marches, Radu, Rossi, Robert J., Uyar, Asli, Wu, Te-Chia, George, Joshy, Stitzel, Michael L., Palucka, A. Karolina, Kuchel, George A., Banchereau, Jacques
Publicado 2017

Copy Number Analysis Identifies Novel Interactions Between Genomic Loci in Ovarian Cancer

por Gorringe, Kylie L., George, Joshy, Anglesio, Michael S., Ramakrishna, Manasa, Etemadmoghadam, Dariush, Cowin, Prue, Sridhar, Anita, Williams, Louise H., Boyle, Samantha E., Yanaihara, Nozomu, Okamoto, Aikou, Urashima, Mitsuyoshi, Smyth, Gordon K., Campbell, Ian G., Bowtell, David D. L.
Publicado 2010

Targeting myostatin/activin A protects against skeletal muscle and bone loss during spaceflight

por Lee, Se-Jin, Lehar, Adam, Meir, Jessica U., Koch, Christina, Morgan, Andrew, Warren, Lara E., Rydzik, Renata, Youngstrom, Daniel W., Chandok, Harshpreet, George, Joshy, Gogain, Joseph, Michaud, Michael, Stoklasek, Thomas A., Liu, Yewei, Germain-Lee, Emily L.
Publicado 2020

Human KIT(+) myeloid cells facilitate visceral metastasis by melanoma

por Yu, Chun I., Martinek, Jan, Wu, Te-Chia, Kim, Kyung In, George, Joshy, Ahmadzadeh, Elaheh, Maser, Rick, Marches, Florentina, Metang, Patrick, Authie, Pierre, Oliveira, Vanessa K.P., Wang, Victor G., Chuang, Jeffrey H., Robson, Paul, Banchereau, Jacques, Palucka, Karolina
Publicado 2021

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

por Ravanmehr, Vida, Blau, Hannah, Cappelletti, Luca, Fontana, Tommaso, Carmody, Leigh, Coleman, Ben, George, Joshy, Reese, Justin, Joachimiak, Marcin, Bocci, Giovanni, Hansen, Peter, Bult, Carol, Rueter, Jens, Casiraghi, Elena, Valentini, Giorgio, Mungall, Christopher, Oprea, Tudor I, Robinson, Peter N
Publicado 2021

Comparison of Expression Profiles in Ovarian Epithelium In Vivo and Ovarian Cancer Identifies Novel Candidate Genes Involved in Disease Pathogenesis

por Emmanuel, Catherine, Gava, Natalie, Kennedy, Catherine, Balleine, Rosemary L., Sharma, Raghwa, Wain, Gerard, Brand, Alison, Hogg, Russell, Etemadmoghadam, Dariush, George, Joshy, Birrer, Michael J., Clarke, Christine L., Chenevix-Trench, Georgia, Bowtell, David D. L., Harnett, Paul R., deFazio, Anna
Publicado 2011