A unique subset of low-risk Wilms tumors is characterized by loss of function of TRIM28 (KAP1), a gene critical in early renal development: A Children’s Oncology Group study

por Armstrong, Amy E., Gadd, Samantha, Huff, Vicki, Gerhard, Daniela S., Dome, Jeffrey S., Perlman, Elizabeth J.
Publicado 2018

Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas

por Chanock, Stephen J, Burdett, Laurie, Yeager, Meredith, Llaca, Victor, Langerød, Anita, Presswalla, Shafaq, Kaaresen, Rolf, Strausberg, Robert L, Gerhard, Daniela S, Kristensen, Vessela, Perou, Charles M, Børresen-Dale, Anne-Lise
Publicado 2007

SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes

por Packer, Bernice R., Yeager, Meredith, Burdett, Laura, Welch, Robert, Beerman, Michael, Qi, Liqun, Sicotte, Hugues, Staats, Brian, Acharya, Mekhala, Crenshaw, Andrew, Eckert, Andrew, Puri, Vinita, Gerhard, Daniela S., Chanock, Stephen J.
Publicado 2006

CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network

por Aksoy, Bülent Arman, Dančík, Vlado, Smith, Kenneth, Mazerik, Jessica N., Ji, Zhou, Gross, Benjamin, Nikolova, Olga, Jaber, Nadia, Califano, Andrea, Schreiber, Stuart L., Gerhard, Daniela S., Hermida, Leandro C., Jagu, Subhashini, Sander, Chris, Floratos, Aris, Clemons, Paul A.
Publicado 2017

Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma

por Lopez, Gonzalo, Conkrite, Karina L., Doepner, Miriam, Rathi, Komal S., Modi, Apexa, Vaksman, Zalman, Farra, Lance M., Hyson, Eric, Noureddine, Moataz, Wei, Jun S., Smith, Malcolm A., Asgharzadeh, Shahab, Seeger, Robert C., Khan, Javed, Auvil, Jaime Guidry, Gerhard, Daniela S., Maris, John M., Diskin, Sharon J.
Publicado 2020

Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia

por McNeer, Nicole A., Philip, John, Geiger, Heather, Ries, Rhonda E., Lavallée, Vincent-Philippe, Walsh, Michael, Shah, Minita, Arora, Kanika, Emde, Anne-Katrin, Robine, Nicolas, Alonzo, Todd A, Kolb, E. Anders, Gamis, Alan S, Smith, Malcolm, Gerhard, Daniela Se, Guidry-Auvil, Jaime, Meshinchi, Soheil, Kentsis, Alex
Publicado 2019

The Role of FAS Receptor Methylation in Osteosarcoma Metastasis

por Sun, Jiayi M., Chow, Wing-Yuk, Xu, Gufeng, Hicks, M. John, Nakka, Manjula, Shen, Jianhe, Ng, Patrick Kwok Shing, Taylor, Aaron M., Yu, Alexander, Farrar, Jason E., Barkauskas, Donald A., Gorlick, Richard, Guidry Auvil, Jaime M., Gerhard, Daniela, Meltzer, Paul, Guerra, Rudy, Man, Tsz-Kwong, Lau, Ching C.
Publicado 2023

Framework for quality assessment of whole genome cancer sequences

por Whalley, Justin P., Buchhalter, Ivo, Rheinbay, Esther, Raine, Keiran M., Stobbe, Miranda D., Kleinheinz, Kortine, Werner, Johannes, Beltran, Sergi, Gut, Marta, Hübschmann, Daniel, Hutter, Barbara, Livitz, Dimitri, Perry, Marc D., Rosenberg, Mara, Saksena, Gordon, Trotta, Jean-Rémi, Eils, Roland, Gerhard, Daniela S., Campbell, Peter J., Schlesner, Matthias, Gut, Ivo G.
Publicado 2020

MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia

por Lim, Emilia L., Trinh, Diane L., Ries, Rhonda E., Wang, Jim, Gerbing, Robert B., Ma, Yussanne, Topham, James, Hughes, Maya, Pleasance, Erin, Mungall, Andrew J., Moore, Richard, Zhao, Yongjun, Aplenc, Richard, Sung, Lillian, Kolb, E. Anders, Gamis, Alan, Smith, Malcolm, Gerhard, Daniela S., Alonzo, Todd A., Meshinchi, Soheil, Marra, Marco A.
Publicado 2017

TCF21 hypermethylation in genetically quiescent clear cell sarcoma of the kidney

por Gooskens, Saskia L., Gadd, Samantha, Guidry Auvil, Jaime M., Gerhard, Daniela S., Khan, Javed, Patidar, Rajesh, Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Mullighan, Charles G., Ma, Jing, Jennings, Lawrence J., de Krijger, Ronald R., van den Heuvel-Eibrink, Marry M., Smith, Malcolm A., Ross, Nicole, Gastier-Foster, Julie M., Perlman, Elizabeth J.
Publicado 2015

MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours

por Perlman, Elizabeth J., Gadd, Samantha, Arold, Stefan T., Radhakrishnan, Anand, Gerhard, Daniela S., Jennings, Lawrence, Huff, Vicki, Guidry Auvil, Jaime M., Davidsen, Tanja M., Dome, Jeffrey S., Meerzaman, Daoud, Hsu, Chih Hao, Nguyen, Cu, Anderson, James, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Gastier-Foster, Julie M., Ross, Nicole, Smith, Malcolm A.
Publicado 2015

A community challenge for a pancancer drug mechanism of action inference from perturbational profile data

por Douglass, Eugene F., Allaway, Robert J., Szalai, Bence, Wang, Wenyu, Tian, Tingzhong, Fernández-Torras, Adrià, Realubit, Ron, Karan, Charles, Zheng, Shuyu, Pessia, Alberto, Tanoli, Ziaurrehman, Jafari, Mohieddin, Wan, Fangping, Li, Shuya, Xiong, Yuanpeng, Duran-Frigola, Miquel, Bertoni, Martino, Badia-i-Mompel, Pau, Mateo, Lídia, Guitart-Pla, Oriol, Chung, Verena, Tang, Jing, Zeng, Jianyang, Aloy, Patrick, Saez-Rodriguez, Julio, Guinney, Justin, Gerhard, Daniela S., Califano, Andrea
Publicado 2022

Germline pathogenic variants in 786 neuroblastoma patients

por Kim, Jung, Vaksman, Zalman, Egolf, Laura E., Kaufman, Rebecca, Evans, J. Perry, Conkrite, Karina L., Danesh, Arnavaz, Lopez, Gonzalo, Randall, Michael P., Dent, Maiah H., Farra, Lance M., Menghani, Neil, Dymek, Malwina, Desai, Heena, Hausler, Ryan, Auvil, Jaime Guidry, Gerhard, Daniela S., Hakonarson, Hakon, Maxwell, Kara N., Cole, Kristina A., Pugh, Trevor J., Bosse, Kristopher R., Khan, Javed, Wei, Jun S., Maris, John M., Stewart, Douglas R., Diskin, Sharon J.
Publicado 2023

LongSAGE profiling of nine human embryonic stem cell lines

por Hirst, Martin, Delaney, Allen, Rogers, Sean A, Schnerch, Angelique, Persaud, Deryck R, O'Connor, Michael D, Zeng, Thomas, Moksa, Michelle, Fichter, Keith, Mah, Diana, Go, Anne, Morin, Ryan D, Baross, Agnes, Zhao, Yongjun, Khattra, Jaswinder, Prabhu, Anna-Liisa, Pandoh, Pawan, McDonald, Helen, Asano, Jennifer, Dhalla, Noreen, Ma, Kevin, Lee, Stephanie, Ally, Adrian, Chahal, Neil, Menzies, Stephanie, Siddiqui, Asim, Holt, Robert, Jones, Steven, Gerhard, Daniela S, Thomson, James A, Eaves, Connie J, Marra, Marco A
Publicado 2007

Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia

por Ma, Xiaotu, Edmonson, Michael, Yergeau, Donald, Muzny, Donna M., Hampton, Oliver A., Rusch, Michael, Song, Guangchun, Easton, John, Harvey, Richard C., Wheeler, David A., Ma, Jing, Doddapaneni, HarshaVardhan, Vadodaria, Bhavin, Wu, Gang, Nagahawatte, Panduka, Carroll, William L., Chen, I-Ming, Gastier-Foster, Julie M., Relling, Mary V., Smith, Malcolm A., Devidas, Meenakshi, Auvil, Jaime M. Guidry, Downing, James R., Loh, Mignon L., Willman, Cheryl L., Gerhard, Daniela S., Mullighan, Charles G., Hunger, Stephen P., Zhang, Jinghui
Publicado 2015

Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration

por Chun, Hye-Jung E., Johann, Pascal D., Milne, Katy, Zapatka, Marc, Buellesbach, Annette, Ishaque, Naveed, Iskar, Murat, Erkek, Serap, Wei, Lisa, Tessier-Cloutier, Basile, Lever, Jake, Titmuss, Emma, Topham, James T., Bowlby, Reanne, Chuah, Eric, Mungall, Karen L., Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Taylor, Michael D., Gerhard, Daniela S., Jones, Steven J.M., Korshunov, Andrey, Gessler, Manfred, Kerl, Kornelius, Hasselblatt, Martin, Frühwald, Michael C., Perlman, Elizabeth J., Nelson, Brad H., Pfister, Stefan M., Marra, Marco A., Kool, Marcel
Publicado 2019

A Children's Oncology Group and TARGET Initiative Exploring the Genetic Landscape of Wilms Tumor

por Gadd, Samantha, Huff, Vicki, Walz, Amy L., Ooms, Ariadne H.A.G., Armstrong, Amy E., Gerhard, Daniela S., Smith, Malcolm A., Guidry Auvil, Jaime M., Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Hermida, Leandro C., Davidsen, Tanja, Gesuwan, Patee, Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Dome, Jeffrey S., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Ross, Nicole, Gastier-Foster, Julie M., Arold, Stefan T., Perlman, Elizabeth J.
Publicado 2017

Pan-cancer genome and transcriptome analyses of 1,699 pediatric leukemias and solid tumors

por Ma, Xiaotu, Liu, Yu, Liu, Yanling, Alexandrov, Ludmil B, Edmonson, Michael N., Gawad, Charles, Zhou, Xin, Li, Yongjin, Rusch, Michael C., Easton, John, Huether, Robert, Gonzalez-Pena, Veronica, Wilkinson, Mark R., Hermida, Leandro C., Davis, Sean, Sioson, Edgar, Pounds, Stanley, Cao, Xueyuan, Ries, Rhonda E., Wang, Zhaoming, Chen, Xiang, Dong, Li, Diskin, Sharon J., Smith, Malcolm A., Guidry Auvil, Jaime M., Meltzer, Paul S., Lau, Ching C., Perlman, Elizabeth J., Maris, John M., Meshinchi, Soheil, Hunger, Stephen P., Gerhard, Daniela S., Zhang, Jinghui
Publicado 2018

Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes.

por Gagliardi, Alessia, Porter, Vanessa L., Zong, Zusheng, Bowlby, Reanne, Titmuss, Emma, Namirembe, Constance, Griner, Nicholas B., Petrello, Hilary, Bowen, Jay, Chan, Simon K., Culibrk, Luka, Darragh, Teresa M., Stoler, Mark H., Wright, Thomas C., Gesuwan, Patee, Dyer, Maureen A., Ma, Yussanne, Mungall, Karen L., Jones, Steven J.M., Nakisige, Carolyn, Novik, Karen, Orem, Jackson, Origa, Martin, Gastier-Foster, Julie M., Yarchoan, Robert, Casper, Corey, Mills, Gordon B., Rader, Janet S., Ojesina, Akinyemi I., Gerhard, Daniela S., Mungall, Andrew J., Marra, Marco A.
Publicado 2020

THE GENOMIC LANDSCAPE OF PEDIATRIC AND YOUNG ADULT T-LINEAGE ACUTE LYMPHOBLASTIC LEUKEMIA

por Liu, Yu, Easton, John, Shao, Ying, Maciaszek, Jamie, Wang, Zhaoming, Wilkinson, Mark R., McCastlain, Kelly, Edmonson, Michael, Pounds, Stanley B., Shi, Lei, Zhou, Xin, Ma, Xiaotu, Sioson, Edgar, Li, Yongjin, Rusch, Michael, Gupta, Pankaj, Pei, Deqing, Cheng, Cheng, Smith, Malcolm A., Auvil, Jaime Guidry, Gerhard, Daniela S., Relling, Mary V., Winick, Naomi J., Carroll, Andrew J., Heerema, Nyla A., Raetz, Elizabeth, Devidas, Meenakshi, Willman, Cheryl L., Harvey, Richard C., Carroll, William L., Dunsmore, Kimberly P., Winter, Stuart S., Wood, Brent L, Sorrentino, Brian P., Downing, James R., Loh, Mignon L., Hunger, Stephen P, Zhang, Jinghui, Mullighan, Charles G.
Publicado 2017