Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

por Schloss, Patrick D., Gevers, Dirk, Westcott, Sarah L.
Publicado 2011

Bioinformatics for the Human Microbiome Project

por Gevers, Dirk, Pop, Mihai, Schloss, Patrick D., Huttenhower, Curtis
Publicado 2012

Vibrio chromosomes share common history

por Kirkup, Benjamin C, Chang, LeeAnn, Chang, Sarah, Gevers, Dirk, Polz, Martin F
Publicado 2010

ConStrains identifies microbial strains in metagenomic datasets

por Luo, Chengwei, Knight, Rob, Siljander, Heli, Knip, Mikael, Xavier, Ramnik J, Gevers, Dirk
Publicado 2015

Metagenomic biomarker discovery and explanation

por Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S, Huttenhower, Curtis
Publicado 2011

MetaRef: a pan-genomic database for comparative and community microbial genomics

por Huang, Katherine, Brady, Arthur, Mahurkar, Anup, White, Owen, Gevers, Dirk, Huttenhower, Curtis, Segata, Nicola
Publicado 2014

Microbial Co-occurrence Relationships in the Human Microbiome

por Faust, Karoline, Sathirapongsasuti, J. Fah, Izard, Jacques, Segata, Nicola, Gevers, Dirk, Raes, Jeroen, Huttenhower, Curtis
Publicado 2012

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

por Segata, Nicola, Haake, Susan Kinder, Mannon, Peter, Lemon, Katherine P, Waldron, Levi, Gevers, Dirk, Huttenhower, Curtis, Izard, Jacques
Publicado 2012

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

por Bokulich, Nicholas A., Subramanian, Sathish, Faith, Jeremiah J., Gevers, Dirk, Gordon, Jeffrey I., Knight, Rob, Mills, David A., Caporaso, J. Gregory
Publicado 2012

Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

por Ciulla, Dawn, Giannoukos, Georgia, Earl, Ashlee, Feldgarden, Michael, Gevers, Dirk, Levin, Joshua, Livny, Jonathan, Ward, Doyle, Gnirke, Andreas, Nusbaum, Chad, Birren, Bruce
Publicado 2010

The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome

por Gevers, Dirk, Knight, Rob, Petrosino, Joseph F., Huang, Katherine, McGuire, Amy L., Birren, Bruce W., Nelson, Karen E., White, Owen, Methé, Barbara A., Huttenhower, Curtis
Publicado 2012

Host genetic variation impacts microbiome composition across human body sites

por Blekhman, Ran, Goodrich, Julia K., Huang, Katherine, Sun, Qi, Bukowski, Robert, Bell, Jordana T., Spector, Timothy D., Keinan, Alon, Ley, Ruth E., Gevers, Dirk, Clark, Andrew G.
Publicado 2015

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

por Morgan, Xochitl C, Kabakchiev, Boyko, Waldron, Levi, Tyler, Andrea D, Tickle, Timothy L, Milgrom, Raquel, Stempak, Joanne M, Gevers, Dirk, Xavier, Ramnik J, Silverberg, Mark S, Huttenhower, Curtis
Publicado 2015

The influence of a short-term gluten-free diet on the human gut microbiome

por Bonder, Marc Jan, Tigchelaar, Ettje F., Cai, Xianghang, Trynka, Gosia, Cenit, Maria C., Hrdlickova, Barbara, Zhong, Huanzi, Vatanen, Tommi, Gevers, Dirk, Wijmenga, Cisca, Wang, Yang, Zhernakova, Alexandra
Publicado 2016

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

por Palmer, Kelli L., Godfrey, Paul, Griggs, Allison, Kos, Veronica N., Zucker, Jeremy, Desjardins, Christopher, Cerqueira, Gustavo, Gevers, Dirk, Walker, Suzanne, Wortman, Jennifer, Feldgarden, Michael, Haas, Brian, Birren, Bruce, Gilmore, Michael S.
Publicado 2012

Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes

por Aggarwala, Varun, Mogno, Ilaria, Li, Zhihua, Yang, Chao, Britton, Graham J., Chen-Liaw, Alice, Mitcham, Josephine, Bongers, Gerold, Gevers, Dirk, Clemente, Jose C., Colombel, Jean-Frederic, Grinspan, Ari, Faith, Jeremiah
Publicado 2021

Author Correction: Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes

por Aggarwala, Varun, Mogno, Ilaria, Li, Zhihua, Yang, Chao, Britton, Graham J., Chen-Liaw, Alice, Mitcham, Josephine, Bongers, Gerold, Gevers, Dirk, Clemente, Jose C., Colombel, Jean-Frederic, Grinspan, Ari, Faith, Jeremiah
Publicado 2022

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

por Aagaard, Kjersti, Riehle, Kevin, Ma, Jun, Segata, Nicola, Mistretta, Toni-Ann, Coarfa, Cristian, Raza, Sabeen, Rosenbaum, Sean, Van den Veyver, Ignatia, Milosavljevic, Aleksandar, Gevers, Dirk, Huttenhower, Curtis, Petrosino, Joseph, Versalovic, James
Publicado 2012

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

por Giannoukos, Georgia, Ciulla, Dawn M, Huang, Katherine, Haas, Brian J, Izard, Jacques, Levin, Joshua Z, Livny, Jonathan, Earl, Ashlee M, Gevers, Dirk, Ward, Doyle V, Nusbaum, Chad, Birren, Bruce W, Gnirke, Andreas
Publicado 2012

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

por Morrow, Ardythe L, Lagomarcino, Anne J, Schibler, Kurt R, Taft, Diana H, Yu, Zhuoteng, Wang, Bo, Altaye, Mekibib, Wagner, Michael, Gevers, Dirk, Ward, Doyle V, Kennedy, Michael A, Huttenhower, Curtis, Newburg, David S
Publicado 2013