Predicting Antigen Presentation—What Could We Learn From a Million Peptides?

por Gfeller, David, Bassani-Sternberg, Michal
Publicado 2018

Beyond the Binding Site: The Role of the β2 – β3 Loop and Extra-Domain Structures in PDZ Domains

por Mostarda, Stefano, Gfeller, David, Rao, Francesco
Publicado 2012

SwissSidechain: a molecular and structural database of non-natural sidechains

por Gfeller, David, Michielin, Olivier, Zoete, Vincent
Publicado 2013

Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins

por Dib, Linda, Salamin, Nicolas, Gfeller, David
Publicado 2018

‘Hotspots’ of Antigen Presentation Revealed by Human Leukocyte Antigen Ligandomics for Neoantigen Prioritization

por Müller, Markus, Gfeller, David, Coukos, George, Bassani-Sternberg, Michal
Publicado 2017

The MHC Motif Atlas: a database of MHC binding specificities and ligands

por Tadros, Daniel M, Eggenschwiler, Simon, Racle, Julien, Gfeller, David
Publicado 2022

Prediction and Experimental Characterization of nsSNPs Altering Human PDZ-Binding Motifs

por Gfeller, David, Ernst, Andreas, Jarvik, Nick, Sidhu, Sachdev S., Bader, Gary D.
Publicado 2014

Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq

por Carmona, Santiago J., Siddiqui, Imran, Bilous, Mariia, Held, Werner, Gfeller, David
Publicado 2020

SwissTargetPrediction: a web server for target prediction of bioactive small molecules

por Gfeller, David, Grosdidier, Aurélien, Wirth, Matthias, Daina, Antoine, Michielin, Olivier, Zoete, Vincent
Publicado 2014

Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data

por Racle, Julien, de Jonge, Kaat, Baumgaertner, Petra, Speiser, Daniel E, Gfeller, David
Publicado 2017

Analysis of Secondary Structure Biases in Naturally Presented HLA-I Ligands

por Perez, Marta A. S., Bassani-Sternberg, Michal, Coukos, George, Gfeller, David, Zoete, Vincent
Publicado 2019

Both APRIL and antibody-fragment-based CAR T cells for myeloma induce BCMA downmodulation by trogocytosis and internalization

por Camviel, Nicolas, Wolf, Benita, Croce, Giancarlo, Gfeller, David, Zoete, Vincent, Arber, Caroline
Publicado 2022

Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival

por Pyke, Rachel M., Genolet, Raphael, Harari, Alexandre, Coukos, George, Gfeller, David, Carter, Hannah
Publicado 2019

Deciphering the landscape of phosphorylated HLA-II ligands

por Solleder, Marthe, Racle, Julien, Guillaume, Philippe, Coukos, George, Bassani-Sternberg, Michal, Gfeller, David
Publicado 2022

MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets

por Kim, TaeHyung, Tyndel, Marc S., Huang, Haiming, Sidhu, Sachdev S., Bader, Gary D., Gfeller, David, Kim, Philip M.
Publicado 2012

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

por Carmona, Santiago J., Teichmann, Sarah A., Ferreira, Lauren, Macaulay, Iain C., Stubbington, Michael J.T., Cvejic, Ana, Gfeller, David
Publicado 2017

Metacells untangle large and complex single-cell transcriptome networks

por Bilous, Mariia, Tran, Loc, Cianciaruso, Chiara, Gabriel, Aurélie, Michel, Hugo, Carmona, Santiago J., Pittet, Mikael J., Gfeller, David
Publicado 2022

High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome

por Chong, Chloe, Marino, Fabio, Pak, HuiSong, Racle, Julien, Daniel, Roy T., Müller, Markus, Gfeller, David, Coukos, George, Bassani-Sternberg, Michal
Publicado 2018

Improved predictions of antigen presentation and TCR recognition with MixMHCpred2.2 and PRIME2.0 reveal potent SARS-CoV-2 CD8(+) T-cell epitopes

por Gfeller, David, Schmidt, Julien, Croce, Giancarlo, Guillaume, Philippe, Bobisse, Sara, Genolet, Raphael, Queiroz, Lise, Cesbron, Julien, Racle, Julien, Harari, Alexandre
Publicado 2023

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity

por Bassani-Sternberg, Michal, Chong, Chloé, Guillaume, Philippe, Solleder, Marthe, Pak, HuiSong, Gannon, Philippe O., Kandalaft, Lana E., Coukos, George, Gfeller, David
Publicado 2017