Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning

por Harris, Cole, Ghaffari, Noushin
Publicado 2008

Intervention in gene regulatory networks via greedy control policies based on long-run behavior

por Qian, Xiaoning, Ivanov, Ivan, Ghaffari, Noushin, Dougherty, Edward R
Publicado 2009

A CoD-based stationary control policy for intervening in large gene regulatory networks

por Ghaffari, Noushin, Ivanov, Ivan, Qian, Xiaoning, Dougherty, Edward R
Publicado 2011

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

por Abante, Jordi, Ghaffari, Noushin, Johnson, Charles D., Datta, Aniruddha
Publicado 2017

Modeling the next generation sequencing sample processing pipeline for the purposes of classification

por Ghaffari, Noushin, Yousefi, Mohammadmahdi R, Johnson, Charles D, Ivanov, Ivan, Dougherty, Edward R
Publicado 2013

Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare

por Doan, Ryan, Cohen, Noah D, Sawyer, Jason, Ghaffari, Noushin, Johnson, Charlie D, Dindot, Scott V
Publicado 2012

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

por Wang, Ying, Ghaffari, Noushin, Johnson, Charles D, Braga-Neto, Ulisses M, Wang, Hui, Chen, Rui, Zhou, Huaijun
Publicado 2011

A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction

por Torres, Maria F., Ghaffari, Noushin, Buiate, Ester A. S., Moore, Neil, Schwartz, Scott, Johnson, Charles D., Vaillancourt, Lisa J.
Publicado 2016

Differential Expression of Circadian Clock Genes in the Bovine Neuroendocrine Adrenal System

por Earnhardt-San, Audrey L., Baker, Emilie C., Riley, David G., Ghaffari, Noushin, Long, Charles R., Cardoso, Rodolfo C., Randel, Ronald D., Welsh, Thomas H.
Publicado 2023

Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer–enhancer interactions

por Beytebiere, Joshua R., Trott, Alexandra J., Greenwell, Ben J., Osborne, Collin A., Vitet, Helene, Spence, Jessica, Yoo, Seung-Hee, Chen, Zheng, Takahashi, Joseph S., Ghaffari, Noushin, Menet, Jerome S.
Publicado 2019

Inter-Individual Variation in DNA Methylation Patterns across Two Tissues and Leukocytes in Mature Brahman Cattle

por Baker, Emilie C., San, Audrey E., Cilkiz, Kubra Z., Littlejohn, Brittni P., Cardoso, Rodolfo C., Ghaffari, Noushin, Long, Charles R., Riggs, Penny K., Randel, Ronald D., Welsh, Thomas H., Riley, David G.
Publicado 2023

Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus

por Guerrero, Felix D., Ghaffari, Noushin, Bendele, Kylie G., Metz, Richard P., Dickens, C. Michael, Blood, Philip D., Tidwell, Jason, Miller, Robert J., de León, Adalberto A. Pérez, Teel, Pete D., Johnson, Charles D.
Publicado 2021

DNA methylation patterns and gene expression from amygdala tissue of mature Brahman cows exposed to prenatal stress

por Baker, Emilie C., Earnhardt, Audrey L., Cilkiz, Kubra Z., Collins, Haley C., Littlejohn, Brittni P., Cardoso, Rodolfo C., Ghaffari, Noushin, Long, Charles R., Riggs, Penny K., Randel, Ronald D., Welsh, Thomas H., Riley, David G.
Publicado 2022

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture

por Ghaffari, Noushin, Sanchez-Flores, Alejandro, Doan, Ryan, Garcia-Orozco, Karina D., Chen, Patricia L., Ochoa-Leyva, Adrian, Lopez-Zavala, Alonso A., Carrasco, J. Salvador, Hong, Chris, Brieba, Luis G., Rudiño-Piñera, Enrique, Blood, Philip D., Sawyer, Jason E., Johnson, Charles D., Dindot, Scott V., Sotelo-Mundo, Rogerio R., Criscitiello, Michael F.
Publicado 2014

The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901

por Guerrero, Felix D., Bendele, Kylie G., Ghaffari, Noushin, Guhlin, Joseph, Gedye, Kristene R., Lawrence, Kevin E., Dearden, Peter K., Harrop, Thomas W.R., Heath, Allen C.G., Lun, Yanni, Metz, Richard P., Teel, Pete, Perez de Leon, Adalberto, Biggs, Patrick J., Pomroy, William E., Johnson, Charles D., Blood, Philip D., Bellgard, Stanley E., Tompkins, Daniel M.
Publicado 2019

A robust benchmark for detection of germline large deletions and insertions

por Zook, Justin M., Hansen, Nancy F., Olson, Nathan D., Chapman, Lesley M., Mullikin, James C., Xiao, Chunlin, Sherry, Stephen, Koren, Sergey, Phillippy, Adam M., Boutros, Paul C., Sahraeian, Sayed Mohammad E., Huang, Vincent, Rouette, Alexandre, Alexander, Noah, Mason, Christopher E., Hajirasouliha, Iman, Ricketts, Camir, Lee, Joyce, Tearle, Rick, Fiddes, Ian T., Barrio, Alvaro Martinez, Wala, Jeremiah, Carroll, Andrew, Ghaffari, Noushin, Rodriguez, Oscar L., Bashir, Ali, Jackman, Shaun, Farrell, John J, Wenger, Aaron M, Alkan, Can, Soylev, Arda, Schatz, Michael C., Garg, Shilpa, Church, George, Marschall, Tobias, Chen, Ken, Fan, Xian, English, Adam C., Rosenfeld, Jeffrey A., Zhou, Weichen, Mills, Ryan E., Sage, Jay M., Davis, Jennifer R., Kaiser, Michael D., Oliver, John S., Catalano, Anthony P., Chaisson, Mark JP, Spies, Noah, Sedlazeck, Fritz J., Salit, Marc
Publicado 2020