Superpose3D: A Local Structural Comparison Program That Allows for User-Defined Structure Representations

por Gherardini, Pier Federico, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2010

Phosphate binding sites identification in protein structures

por Parca, Luca, Gherardini, Pier Federico, Helmer-Citterich, Manuela, Ausiello, Gabriele
Publicado 2011

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

por Bianchi, Valerio, Gherardini, Pier Federico, Helmer-Citterich, Manuela, Ausiello, Gabriele
Publicado 2012

Modular architecture of nucleotide-binding pockets

por Gherardini, Pier Federico, Ausiello, Gabriele, Russell, Robert B., Helmer-Citterich, Manuela
Publicado 2010

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

por Zanzoni, Andreas, Ausiello, Gabriele, Via, Allegra, Gherardini, Pier Federico, Helmer-Citterich, Manuela
Publicado 2007

Structural motifs recurring in different folds recognize the same ligand fragments

por Ausiello, Gabriele, Gherardini, Pier Federico, Gatti, Elena, Incani, Ottaviano, Helmer-Citterich, Manuela
Publicado 2009

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

por Parca, Luca, Mangone, Iolanda, Gherardini, Pier Federico, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2011

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

por Palmeri, Antonio, Ausiello, Gabriele, Ferrè, Fabrizio, Helmer-Citterich, Manuela, Gherardini, Pier Federico
Publicado 2014

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

por Ausiello, Gabriele, Gherardini, Pier Federico, Marcatili, Paolo, Tramontano, Anna, Via, Allegra, Helmer-Citterich, Manuela
Publicado 2008

False occurrences of functional motifs in protein sequences highlight evolutionary constraints

por Via, Allegra, Gherardini, Pier Federico, Ferraro, Enrico, Ausiello, Gabriele, Scalia Tomba, Gianpaolo, Helmer-Citterich, Manuela
Publicado 2007

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites

por Zanzoni, Andreas, Carbajo, Daniel, Diella, Francesca, Gherardini, Pier Federico, Tramontano, Anna, Helmer-Citterich, Manuela, Via, Allegra
Publicado 2011

Identification of Nucleotide-Binding Sites in Protein Structures: A Novel Approach Based on Nucleotide Modularity

por Parca, Luca, Gherardini, Pier Federico, Truglio, Mauro, Mangone, Iolanda, Ferrè, Fabrizio, Helmer-Citterich, Manuela, Ausiello, Gabriele
Publicado 2012

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures

por Via, Allegra, Peluso, Daniele, Gherardini, Pier Federico, de Rinaldis, Emanuele, Colombo, Teresa, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2007

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

por Palmeri, Antonio, Gherardini, Pier Federico, Tsigankov, Polina, Ausiello, Gabriele, Späth, Gerald F, Zilberstein, Dan, Helmer-Citterich, Manuela
Publicado 2011

Alternative splicing tends to avoid partial removals of protein-protein interaction sites

por Colantoni, Alessio, Bianchi, Valerio, Gherardini, Pier Federico, Scalia Tomba, Gianpaolo, Ausiello, Gabriele, Helmer-Citterich, Manuela, Ferrè, Fabrizio
Publicado 2013

B-Pred, a structure based B-cell epitopes prediction server

por Giacò, Luciano, Amicosante, Massimo, Fraziano, Maurizio, Gherardini, Pier Federico, Ausiello, Gabriele, Helmer-Citterich, Manuela, Colizzi, Vittorio, Cabibbo, Andrea
Publicado 2012

Mapping the human phosphatome on growth pathways

por Sacco, Francesca, Gherardini, Pier Federico, Paoluzi, Serena, Saez-Rodriguez, Julio, Helmer-Citterich, Manuela, Ragnini-Wilson, Antonella, Castagnoli, Luisa, Cesareni, Gianni
Publicado 2012

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

por Frei, Andreas P, Bava, Felice Alessio, Zunder, Eli R, Hsieh, Elena WY, Chen, Shih-Yu, Nolan, Garry P, Gherardini, Pier Federico
Publicado 2016

Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy

por Hartmann, Felix J., Babdor, Joel, Gherardini, Pier Federico, Amir, El-Ad D., Jones, Kyle, Sahaf, Bita, Marquez, Diana M., Krutzik, Peter, O’Donnell, Erika, Sigal, Natalia, Maecker, Holden T., Meyer, Everett, Spitzer, Matthew H., Bendall, Sean C.
Publicado 2019

Ipilimumab alone or in combination with nivolumab in patients with advanced melanoma who have progressed or relapsed on PD-1 blockade: clinical outcomes and translational biomarker...

por Friedman, Claire F, Spencer, Christine, Cabanski, Christopher R, Panageas, Katherine S, Wells, Daniel K, Ribas, Antoni, Tawbi, Hussein, Tsai, Katy, Postow, Michael, Shoushtari, Alexander, Chapman, Paul, Karakunnel, Joyson, Bucktrout, Samantha, Gherardini, Pier, Hollmann, Travis J, Chen, Richard O, Callahan, Margaret, LaVallee, Theresa, Ibrahim, Ramy, Wolchok, Jedd
Publicado 2022