Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie

por Giannoulatou, Eleni, Park, Shin-Ho, Humphreys, David T, Ho, Joshua WK
Publicado 2014

VPOT: A Customizable Variant Prioritization Ordering Tool for Annotated Variants

por Ip, Eddie, Chapman, Gavin, Winlaw, David, Dunwoodie, Sally L., Giannoulatou, Eleni
Publicado 2019

Benchmarking the Effectiveness and Accuracy of Multiple Mitochondrial DNA Variant Callers: Practical Implications for Clinical Application

por Ip, Eddie K. K., Troup, Michael, Xu, Colin, Winlaw, David S., Dunwoodie, Sally L., Giannoulatou, Eleni
Publicado 2022

Transposon clusters as substrates for aberrant splice-site activation

por Alvarez, Maria Elena Vilar, Chivers, Martin, Borovska, Ivana, Monger, Steven, Giannoulatou, Eleni, Kralovicova, Jana, Vorechovsky, Igor
Publicado 2020

The rapid evolution of flagellar ion selectivity in experimental populations of E. coli

por Ridone, Pietro, Ishida, Tsubasa, Lin, Angela, Humphreys, David T., Giannoulatou, Eleni, Sowa, Yoshiyuki, Baker, Matthew A. B.
Publicado 2022

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data

por Gudkov, Mikhail, Thibaut, Loïc, Khushi, Matloob, Blue, Gillian M., Winlaw, David S., Dunwoodie, Sally L., Giannoulatou, Eleni
Publicado 2023

Comparison of somatic variant detection algorithms using Ion Torrent targeted deep sequencing data

por Wang, Qing, Kotoula, Vassiliki, Hsu, Pei-Chen, Papadopoulou, Kyriaki, Ho, Joshua W. K., Fountzilas, George, Giannoulatou, Eleni
Publicado 2019

Dynamics of Transforming Growth Factor (TGF)-β Superfamily Cytokine Induction During HIV-1 Infection Are Distinct From Other Innate Cytokines

por Dickinson, Matthew, Kliszczak, Anna E., Giannoulatou, Eleni, Peppa, Dimitra, Pellegrino, Pierre, Williams, Ian, Drakesmith, Hal, Borrow, Persephone
Publicado 2020

Isogenic mice exhibit sexually-dimorphic DNA methylation patterns across multiple tissues

por McCormick, Helen, Young, Paul E., Hur, Suzy S. J., Booher, Keith, Chung, Hunter, Cropley, Jennifer E., Giannoulatou, Eleni, Suter, Catherine M.
Publicado 2017

Arterial dissections: Common features and new perspectives

por Bax, Monique, Romanov, Valentin, Junday, Keerat, Giannoulatou, Eleni, Martinac, Boris, Kovacic, Jason C., Liu, Renjing, Iismaa, Siiri E., Graham, Robert M.
Publicado 2022

Familial adenomatous patients with desmoid tumours show increased expression of miR-34a in serum and high levels in tumours

por Walton, Sarah-Jane, Lewis, Amy, Jeffery, Rosemary, Thompson, Hannah, Feakins, Roger, Giannoulatou, Eleni, Yau, Christopher, Lindsay, James O., Clark, Susan K., Silver, Andrew
Publicado 2016

Rapidly Escalating Hepcidin and Associated Serum Iron Starvation Are Features of the Acute Response to Typhoid Infection in Humans

por Darton, Thomas C., Blohmke, Christoph J., Giannoulatou, Eleni, Waddington, Claire S., Jones, Claire, Sturges, Pamela, Webster, Craig, Drakesmith, Hal, Pollard, Andrew J., Armitage, Andrew E.
Publicado 2015

The miR-200 family is increased in dysplastic lesions in ulcerative colitis patients

por Lewis, Amy, Felice, Carla, Kumagai, Tomoko, Lai, Cecilia, Singh, Kriti, Jeffery, Rosemary R., Feakins, Roger, Giannoulatou, Eleni, Armuzzi, Alessandro, Jawad, Noor, Lindsay, James O., Silver, Andrew
Publicado 2017

Smchd1-Dependent and -Independent Pathways Determine Developmental Dynamics of CpG Island Methylation on the Inactive X Chromosome

por Gendrel, Anne-Valerie, Apedaile, Anwyn, Coker, Heather, Termanis, Ausma, Zvetkova, Ilona, Godwin, Jonathan, Tang, Y. Amy, Huntley, Derek, Montana, Giovanni, Taylor, Steven, Giannoulatou, Eleni, Heard, Edith, Stancheva, Irina, Brockdorff, Neil
Publicado 2012

Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

por Maher, Geoffrey J., Ralph, Hannah K., Ding, Zhihao, Koelling, Nils, Mlcochova, Hana, Giannoulatou, Eleni, Dhami, Pawan, Paul, Dirk S., Stricker, Stefan H., Beck, Stephan, McVean, Gilean, Wilkie, Andrew O.M., Goriely, Anne
Publicado 2018

Whole-genome sequencing of spermatocytic tumors provides insights into the mutational processes operating in the male germline

por Giannoulatou, Eleni, Maher, Geoffrey J., Ding, Zhihao, Gillis, Ad J. M., Dorssers, Lambert C. J., Hoischen, Alexander, Rajpert-De Meyts, Ewa, McVean, Gilean, Wilkie, Andrew O. M., Looijenga, Leendert H. J., Goriely, Anne
Publicado 2017

Genotyping data of routinely processed matched primary/metastatic tumor samples

por Kotoula, Vassiliki, Chatzopoulos, Kyriakos, Papadopoulou, Kyriaki, Giannoulatou, Eleni, Koliou, Georgia-Angeliki, Karavasilis, Vasilios, Pazarli, Elissavet, Pervana, Stavroula, Kafiri, Georgia, Tsoulfas, Georgios, Chrisafi, Sofia, Sgouramali, Helen, Papakostas, Pavlos, Pectasides, Dimitrios, Hytiroglou, Prodromos, Pentheroudakis, George, Fountzilas, George
Publicado 2020

Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site

por Al-Zyoud, Walid A., Hynson, Robert MG., Ganuelas, Lorraine A., Coster, Adelle CF., Duff, Anthony P., Baker, Matthew AB., Stewart, Alastair G., Giannoulatou, Eleni, Ho, Joshua WK., Gaus, Katharina, Liu, Dali, Lee, Lawrence K., Böcking, Till
Publicado 2016

Evaluation of the immunogenicity and impact on the latent HIV-1 reservoir of a conserved region vaccine, MVA.HIVconsv, in antiretroviral therapy-treated subjects

por Hancock, Gemma, Morón-López, Sara, Kopycinski, Jakub, Puertas, Maria C., Giannoulatou, Eleni, Rose, Annie, Salgado, Maria, Hayton, Emma-Jo, Crook, Alison, Morgan, Catharine, Angus, Brian, Chen, Fabian, Yang, Hongbing, Martinez-Picado, Javier, Hanke, Tomas, Dorrell, Lucy
Publicado 2017

Is There an Independent Role of TERT and NF1 in High Grade Gliomas?

por Razis, Evangelia, Kotoula, Vassiliki, Koliou, Georgia-Angeliki, Papadopoulou, Kyriaki, Vrettou, Eleni, Giannoulatou, Eleni, Tikas, Ioannis, Labropoulos, Stefanos V., Rigakos, Georgios, Papaemmanoyil, Styliani, Romanidou, Ourania, Bourkoula, Eugenia, Nomikos, Panagiotis, Iliadis, Georgios, Nasioulas, George, Selviaridis, Panagiotis, Polyzoidis, Konstantinos, Fountzilas, George
Publicado 2019