Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter

por Sahl, Jason W., Gillece, John D., Schupp, James M., Waddell, Victor G., Driebe, Elizabeth M., Engelthaler, David M., Keim, Paul
Publicado 2013

Randomized trial assessing impact of probiotic supplementation on gut microbiome and clinical outcome from targeted therapy in metastatic renal cell carcinoma

por Dizman, Nazli, Hsu, JoAnn, Bergerot, Paulo G., Gillece, John D., Folkerts, Megan, Reining, Lauren, Trent, Jeffrey, Highlander, Sarah K., Pal, Sumanta K.
Publicado 2020

Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot Study

por Wong, Chi Wah, Yost, Susan E., Lee, Jin Sun, Gillece, John D., Folkerts, Megan, Reining, Lauren, Highlander, Sarah K., Eftekhari, Zahra, Mortimer, Joanne, Yuan, Yuan
Publicado 2021

Real-time PCR assays for genotyping of Cryptococcus gattii in North America

por Kelley, Erin J, Driebe, Elizabeth M, Etienne, Kizee, Brandt, Mary E, Schupp, James M, Gillece, John D, Trujillo, Jesse S, Lockhart, Shawn R, Deak, Eszter, Keim, Paul S, Engelthaler, David M
Publicado 2014

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

por Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Publicado 2017

Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity

por Gillece, John D., Schupp, James M., Balajee, S. Arunmozhi, Harris, Julie, Pearson, Talima, Yan, Yongpan, Keim, Paul, DeBess, Emilio, Marsden-Haug, Nicola, Wohrle, Ron, Engelthaler, David M., Lockhart, Shawn R.
Publicado 2011

Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition

por Highlander, Sarah K., Wood, Jason M., Gillece, John D., Folkerts, Megan, Fofanov, Viacheslav, Furstenau, Tara, Singh, Nitin K., Guan, Lisa, Seuylemezian, Arman, Benardini, James N., Engelthaler, David M., Venkateswaran, Kasthuri, Keim, Paul S.
Publicado 2023

A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens

por Sahl, Jason W., Pearson, Talima, Okinaka, Richard, Schupp, James M., Gillece, John D., Heaton, Hannah, Birdsell, Dawn, Hepp, Crystal, Fofanov, Viacheslav, Noseda, Ramón, Fasanella, Antonio, Hoffmaster, Alex, Wagner, David M., Keim, Paul
Publicado 2016

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes

por Stone, Nathan E., Sidak-Loftis, Lindsay C., Sahl, Jason W., Vazquez, Adam J., Wiggins, Kristin B., Gillece, John D., Hicks, Nathan D., Schupp, James M., Busch, Joseph D., Keim, Paul, Wagner, David M.
Publicado 2016

Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study

por Colman, Rebecca E., Anderson, Julia, Lemmer, Darrin, Lehmkuhl, Erik, Georghiou, Sophia B., Heaton, Hannah, Wiggins, Kristin, Gillece, John D., Schupp, James M., Catanzaro, Donald G., Crudu, Valeriu, Cohen, Ted, Rodwell, Timothy C., Engelthaler, David M.
Publicado 2016

Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak

por Hendriksen, Rene S., Price, Lance B., Schupp, James M., Gillece, John D., Kaas, Rolf S., Engelthaler, David M., Bortolaia, Valeria, Pearson, Talima, Waters, Andrew E., Prasad Upadhyay, Bishnu, Devi Shrestha, Sirjana, Adhikari, Shailaja, Shakya, Geeta, Keim, Paul S., Aarestrup, Frank M.
Publicado 2011

Francisella tularensis subsp. tularensis Group A.I, United States

por Birdsell, Dawn N., Johansson, Anders, Öhrman, Caroline, Kaufman, Emily, Molins, Claudia, Pearson, Talima, Gyuranecz, Miklós, Naumann, Amber, Vogler, Amy J., Myrtennäs, Kerstin, Larsson, Pär, Forsman, Mats, Sjödin, Andreas, Gillece, John D., Schupp, James, Petersen, Jeannine M., Keim, Paul, Wagner, David M.
Publicado 2014

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

por Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Publicado 2015

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado 2015

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado 2014

Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis

por Price, Erin P., Sarovich, Derek S., Webb, Jessica R., Hall, Carina M., Jaramillo, Sierra A., Sahl, Jason W., Kaestli, Mirjam, Mayo, Mark, Harrington, Glenda, Baker, Anthony L., Sidak-Loftis, Lindsay C., Settles, Erik W., Lummis, Madeline, Schupp, James M., Gillece, John D., Tuanyok, Apichai, Warner, Jeffrey, Busch, Joseph D., Keim, Paul, Currie, Bart J., Wagner, David M.
Publicado 2017

Cryptococcus gattii in North American Pacific Northwest: Whole-Population Genome Analysis Provides Insights into Species Evolution and Dispersal

por Engelthaler, David M., Hicks, Nathan D., Gillece, John D., Roe, Chandler C., Schupp, James M., Driebe, Elizabeth M., Gilgado, Felix, Carriconde, Fabian, Trilles, Luciana, Firacative, Carolina, Ngamskulrungroj, Popchai, Castañeda, Elizabeth, Lazera, Marcia dos Santos, Melhem, Marcia S. C., Pérez-Bercoff, Åsa, Huttley, Gavin, Sorrell, Tania C., Voelz, Kerstin, May, Robin C., Fisher, Matthew C., Thompson, George R., Lockhart, Shawn R., Keim, Paul, Meyer, Wieland
Publicado 2014

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

por Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Publicado 2020

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado 2020