An initial genomic blueprint of the healthy human oesophageal microbiome

por Gilroy, Rachel, Adam, Mina E., Kumar, Bhaskar, Pallen, Mark J.
Publicado 2023

Archaeal and Bacterial Metagenome-Assembled Genome Sequences Derived from Pig Feces

por Crossfield, Matthew, Gilroy, Rachel, Ravi, Anuradha, Baker, David, La Ragione, Roberto M., Pallen, Mark J.
Publicado 2022

Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens

por Thomson, Nicholas M., Gilroy, Rachel, Getino, Maria, Foster-Nyarko, Ebenezer, van Vliet, Arnoud H.M., La Ragione, Roberto M., Pallen, Mark J.
Publicado 2022

Metagenomic investigation of the equine faecal microbiome reveals extensive taxonomic diversity

por Gilroy, Rachel, Leng, Joy, Ravi, Anuradha, Adriaenssens, Evelien M., Oren, Aharon, Baker, Dave, La Ragione, Roberto M., Proudman, Christopher, Pallen, Mark J.
Publicado 2022

The use of chicken and insect infection models to assess the virulence of African Salmonella Typhimurium ST313

por Lacharme-Lora, Lizeth, Owen, Siân V., Blundell, Richard, Canals, Rocío, Wenner, Nicolas, Perez-Sepulveda, Blanca, Fong, Wai Yee, Gilroy, Rachel, Wigley, Paul, Hinton, Jay C. D.
Publicado 2019

B lymphocytes play a limited role in clearance of Campylobacter jejuni from the chicken intestinal tract

por Lacharme-Lora, Lizeth, Chaloner, Gemma, Gilroy, Rachel, Humphrey, Suzanne, Gibbs, Kirsty, Jopson, Sue, Wright, Elli, Reid, William, Ketley, Julian, Humphrey, Tom, Williams, Nicola, Rushton, Steven, Wigley, Paul
Publicado 2017

Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome

por Ravi, Anuradha, Troncoso-Rey, Perla, Ahn-Jarvis, Jennifer, Corbin, Kendall R., Harris, Suzanne, Harris, Hannah, Aydin, Alp, Kay, Gemma L., Le Viet, Thanh, Gilroy, Rachel, Pallen, Mark J., Page, Andrew J., O’Grady, Justin, Warren, Frederick J.
Publicado 2022

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture

por Gilroy, Rachel, Ravi, Anuradha, Getino, Maria, Pursley, Isabella, Horton, Daniel L., Alikhan, Nabil-Fareed, Baker, Dave, Gharbi, Karim, Hall, Neil, Watson, Mick, Adriaenssens, Evelien M., Foster-Nyarko, Ebenezer, Jarju, Sheikh, Secka, Arss, Antonio, Martin, Oren, Aharon, Chaudhuri, Roy R., La Ragione, Roberto, Hildebrand, Falk, Pallen, Mark J.
Publicado 2021

CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

por Baker, Dave J., Aydin, Alp, Le-Viet, Thanh, Kay, Gemma L., Rudder, Steven, de Oliveira Martins, Leonardo, Tedim, Ana P., Kolyva, Anastasia, Diaz, Maria, Alikhan, Nabil-Fareed, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Trotter, Alexander J., Thomson, Nicholas M., Gilroy, Rachel, Griffith, Luke, Adriaenssens, Evelien M., Stanley, Rachael, Charles, Ian G., Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Meader, Emma, Mather, Alison E., Webber, Mark A., Dervisevic, Samir, Page, Andrew J., O’Grady, Justin
Publicado 2021

Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

por Page, Andrew J., Mather, Alison E., Le-Viet, Thanh, Meader, Emma J., Alikhan, Nabil-Fareed, Kay, Gemma L., de Oliveira Martins, Leonardo, Aydin, Alp, Baker, David J., Trotter, Alexander J., Rudder, Steven, Tedim, Ana P., Kolyva, Anastasia, Stanley, Rachael, Yasir, Muhammad, Diaz, Maria, Potter, Will, Stuart, Claire, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Thomson, Nicholas M., Adriaenssens, Evelien M., Swingler, Tracey, Gilroy, Rachel A. J., Griffith, Luke, Sethi, Dheeraj K., Aggarwal, Dinesh, Brown, Colin S., Davidson, Rose K., Kingsley, Robert A., Bedford, Luke, Coupland, Lindsay J., Charles, Ian G., Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Webber, Mark A., Smith, S. J. Louise, Chand, Meera, Dervisevic, Samir, O’Grady, Justin
Publicado 2021

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

por Alm, Erik, Broberg, Eeva K, Connor, Thomas, Hodcroft, Emma B, Komissarov, Andrey B, Maurer-Stroh, Sebastian, Melidou, Angeliki, Neher, Richard A, O’Toole, Áine, Pereyaslov, Dmitriy, Beerenwinkel, Niko, Posada-Céspedes, Susana, Jablonski, Kim Philipp, Ferreira, Pedro Falé, Topolsky, Ivan, Avšič-Županc, Tatjana, Korva, Miša, Poljak, Mario, Zakotnik, Samo, Zorec, Tomaž Mark, Bragstad, Karoline, Hungnes, Olav, Stene-Johansen, Kathrine, Reusken, Chantal, Meijer, Adam, Vennema, Harry, Ruiz-Roldán, Lidia, Bracho, María Alma, García-González, Neris, Chiner-Oms, Álvaro, Cancino-Muñoz, Irving, Comas, Iñaki, Goig, Galo A, Torres-Puente, Manuela, López, Mariana G, Martínez-Priego, Llúcia, D'Auria, Giuseppe, Ferrús-Abad, Loreto, de Marco, Griselda, Galan-Vendrell, Inmaculada, Carbó-Ramirez, Sandra, Ruíz-Hueso, Paula, Coscollá, Mireia, Polackova, Katerina, Kramna, Lenka, Cinek, Ondrej, Richter, Jan, Krashias, George, Tryfonos, Christina, Bashiardes, Stavros, Koptides, Dana, Christodoulou, Christina, Bartolini, Barbara, Gruber, Cesare Em, Di Caro, Antonino, Castilletti, Concetta, Stefani, Fabrizio, Rimoldi, Sara Giordana, Romeri, Francesca, Salerno, Franco, Polesello, Stefano, Nagy, Alexander, Jirincova, Helena, Vecerova, Jaromira, Novakova, Ludmila, Cordey, Samuel, Murtskhvaladze, Marine, Kotaria, Nato, Schär, Tobias, Beisel, Christian, Vugrek, Oliver, Rokić, Filip, Trgovec-Greif, Lovro, Jurak, Igor, Rukavina, Tomislav, Sučić, Neven, Schønning, Kristian, Karst, Søren M, Kirkegaard, Rasmus H, Michaelsen, Thomas Y, Sørensen, Emil Aa, Knutson, Simon, Brandt, Jakob, Le-Quy, Vang, Sørensen, Trine, Petersen, Celine, Pedersen, Martin Schou, Larsen, Sanne Løkkegaard, Skov, Marianne Nielsine, Rasmussen, Morten, Fonager, Jannik, Fomsgaard, Anders, Maksyutov, Rinat Amirovich, Gavrilova, Elena Vasil'Evna, Pyankov, Oleg Victorovich, Bodnev, Sergey Alexandrovich, Tregubchak, Tatyana Vladimirovna, Shvalov, Alexander Nikolayevich, Antonets, Denis Victorovich, Resende, Paola Cristina, Goya, Stephanie, Perrin, Amandine, Lee, Raphael Tc, Yadahalli, Shilpa, Han, Alvin X, Russell, Colin A, Schmutz, Stefan, Zaheri, Maryam, Kufner, Verena, Huber, Michael, Trkola, Alexandra, Antwerpen, Markus, Walter, Mathias C, van der Werf, Sylvie, Gambaro, Fabiana, Behillil, Sylvie, Enouf, Vincent, Donati, Flora, Ustinova, Monta, Rovite, Vita, Klovins, Janis, Savicka, Oksana, Wienecke-Baldacchino, Anke K, Ragimbeau, Catherine, Fournier, Guillaume, Mossong, Joël, Aberle, Stephan W, Haukland, Mattias, Enkirch, Theresa, Advani, Abdolreza, Karlberg, Maria Lind, Lindsjö, Oskar Karlsson, Broddesson, Sandra, Sláviková, Monika, Ličková, Martina, Klempa, Boris, Staroňová, Edita, Tichá, Elena, Szemes, Tomáš, Rusňáková, Diana, Stadler, Tanja, Quer, Josep, Anton, Andres, Andres, Cristina, Piñana, Maria, Garcia-Cehic, Damir, Pumarola, Tomas, Izopet, Jacques, Gioula, Georgia, Exindari, Maria, Papa, Anna, Chatzidimitriou, Dimitrios, Metallidis, Symeon, Pappa, Stella, Macek Jr, Milan, Geryk, Jan, Brož, Petr, Briksí, Aleš, Hubáček, Petr, Dřevínek, Pavel, Zajac, Miroslav, Kvapil, Petr, Holub, Michal, Kvapilová, Kateřina, Novotný, Adam, Kašný, Martin, Klempt, Petr, Vapalahti, Olli, Smura, Teemu, Sironen, Tarja, Selhorst, Philippe, Anthony, Colin, Ariën, Kevin, Simon-Loriere, Etienne, Rabalski, Lukasz, Bienkowska-Szewczyk, Krystyna, Borges, Vítor, Isidro, Joana, Gomes, João Paulo, Guiomar, Raquel, Pechirra, Pedro, Costa, Inês, Duarte, Sílvia, Vieira, Luís, Pyrc, Krzysztof, Zuckerman, Neta S, Turdikulova, Shahlo, Abdullaev, Alisher, Dalimova, Dilbar, Abdurakhimov, Abror, Tagliabracci, Adriano, Alessandrini, Federica, Melchionda, Filomena, Onofri, Valerio, Turchi, Chiara, Bagnarelli, Patrizia, Menzo, Stefano, Caucci, Sara, Di Sante, Laura, Popa, Alexandra, Genger, Jakob-Wendelin, Agerer, Benedikt, Lercher, Alexander, Endler, Lukas, Smyth, Mark, Penz, Thomas, Schuster, Michael, Senekowitsch, Martin, Laine, Jan, Bock, Christoph, Bergthaler, Andreas, Shevtsov, Alexandr, Kalendar, Ruslan, Ramanculov, Yerlan, Graf, Alexander, Muenchhoff, Maximilian, Keppler, Oliver T, Krebs, Stefan, Blum, Helmut, Marcello, Alessandro, Licastro, Danilo, D'Agaro, Pierlanfranco, Laubscher, Florian, Vidanovic, Dejan, Tesovic, Bojana, Volkening, Jeremy, Clementi, Nicola, Mancini, Nicasio, Rupnik, Maja, Mahnic, Aleksander, Walker, Andreas, Houwaart, Torsten, Wienemann, Tobias, Vasconcelos, Malte Kohns, Strelow, Daniel, Jensen, Björn-Erik Ole, Senff, Tina, Hülse, Lisanna, Adams, Ortwin, Andree, Marcel, Hauka, Sandra, Feldt, Torsten, Keitel, Verena, Kindgen-Milles, Detlef, Timm, Jörg, Pfeffer, Klaus, Dilthey, Alexander T, Moore, Catherine, Ozdarendeli, Aykut, Pavel, Shaikh Terkis Islam, Yetiskin, Hazel, Aydin, Gunsu, Holyavkin, Can, Uygut, Muhammet Ali, Cevik, Ceren, Shchetinin, Alexey, Gushchin, Vladimir, Dinler-Doganay, Gizem, Doganay, Levent, Kizilboga-Akgun, Tugba, Karacan, Ilker, Pancer, Katarzyna, Maes, Piet, Martí-Carreras, Joan, Wawina-Bokalanga, Tony, Vanmechelen, Bert, Thürmer, Andrea, Wedde, Marianne, Dürrwald, Ralf, Von Kleist, Max, Drechsel, Oliver, Wolff, Thorsten, Fuchs, Stephan, Kmiecinski, Rene, Michel, Janine, Nitsche, Andreas, Casas, Inmaculada, Caballero, María Iglesias, Zaballos, Ángel, Jiménez, Pilar, Jiménez, Mercedes, Fernández, Sara Monzón, Fernández, Sarai Varona, De La Plaza, Isabel Cuesta, Fadeev, Artem, Ivanova, Anna, Sergeeva, Mariia, Stefanelli, Paola, Torok, M Estee, Hall, Grant, da Silva Filipe, Ana, Turtle, Lance, Afifi, Safiah, Mccluggage, Kathryn, Beer, Robert, Ledesma, Juan, Maksimovic, Joshua, Spellman, Karla, Hamilton, William L, Marchbank, Angela, Southgate, Joel Alexander, Underwood, Anthony, Taylor, Ben, Yeats, Corin, Abudahab, Khalil, Gemmell, Matthew R, Eccles, Richard, Lucaci, Anita, Nelson, Charlotte Abigail, Rainbow, Lucille, Whitehead, Mark, Gregory, Richard, Haldenby, Sam, Paterson, Steve, Hughes, Margaret A, Curran, Martin D, Baker, David, Tucker, Rachel, Green, Luke R, Feltwell, Theresa, Halstead, Fenella D, Wyles, Matthew, Jahun, Aminu S, Ahmad, Shazaad S Y, Georgana, Iliana, Goodfellow, Ian, Yakovleva, Anna, Meredith, Luke W, Gavriil, Artemis, Awan, Ali Raza, Fisher, Chloe, Edgeworth, Jonathan, Lynch, Jessica, Moore, Nathan, Williams, Rebecca, Kidd, Stephen P, Cortes, Nicholas, Brunker, Kirstyn, Mccrone, John T, Quick, Joshua, Duckworth, Nichola, Walsh, Sarah, Sloan, Tim, Ludden, Catherine, George, Ryan P, Eltringham, Gary, Brown, Julianne R, Aranday-Cortes, Elihu, Shepherd, James G, Hughes, Joseph, Li, Kathy K, Williams, Thomas C, Johnson, Natasha, Jesudason, Natasha, Mair, Daniel, Thomson, Emma, Shah, Rajiv, Parr, Yasmin A, Carmichael, Stephen, Robertson, David L, Nomikou, Kyriaki, Broos, Alice, Niebel, Marc, Smollett, Katherine, Tong, Lily, Miah, Shahjahan, Wittner, Anita, Phillips, Nicole, Payne, Brendan, Dewar, Rebecca, Holmes, Alison, Bolt, Frances, Price, James R, Mookerjee, Siddharth, Sethi, Dheeraj K, Potter, Will, Stanley, Rachael, Prakash, Reenesh, Dervisevic, Samir, Graham, Jonathan Clive, Nelson, Andrew, Smith, Darren, Young, Gregory R, Yew, Wen Chyin, Todd, John A, Trebes, Amy, Andersson, Monique, Bull, Matthew, Watkins, Joanne, Birchley, Alec, Gatica-Wilcox, Bree, Gilbert, Lauren, Kumžiene-Summerhayes, Sara, Rey, Sara, Chauhan, Anoop, Butcher, Ethan, Bicknell, Kelly, Elliott, Scott, Glaysher, Sharon, Lackenby, Angie, Bibby, David, Platt, Steven, Mohamed, Hodan, Machin, Nicholas William, Mbisa, Jean Lutamyo, Evans, Jonathan, Perry, Malorie, Pacchiarini, Nicole, Corden, Sally, Adams, Alexander Geraint, Gaskin, Amy, Coombs, Jason, Graham, Lee John, Cottrell, Simon, Morgan, Mari, Gifford, Laura, Kolyva, Anastasia, Rudder, Steven John, Trotter, Alexander J, Mather, Alison E, Aydin, Alp, Page, Andrew J, Kay, Gemma L, de Oliveira Martins, Leonardo, Yasir, Muhammad, Alikhan, Nabil-Fareed, Thomson, Nicholas M, Gilroy, Rachel, Kingsley, Robert A, O'Grady, Justin, Gutierrez, Ana Victoria, Diaz, Maria, Le Viet, Thanh, Tedim, Ana P, Adriaenssens, Evelien M, Mcclure, C Patrick, Moore, Christopher, Sang, Fei, Clark, Gemma, Howson-Wells, Hannah C, Debebe, Johnny, Ball, Jonathan, Chappell, Joseph, Khakh, Manjinder, Carlile, Matthew, Loose, Matthew, Lister, Michelle M, Holmes, Nadine, Tsoleridis, Theocharis, Fleming, Vicki M, Wright, Victoria, Smith, Wendy, Gallagher, Michael D, Parker, Matthew, Partridge, David G, Evans, Cariad, Baker, Paul, Essex, Sarah, Liggett, Steven, Keeley, Alexander J, Bashton, Matthew, Rooke, Stefan, Dervisevic, Samir, Meader, Emma Jane, Balcazar Lopez, Carlos Enrique, Angyal, Adrienn, Kristiansen, Mark, Tutill, Helena J, Findlay, Jacqueline, Mestek-Boukhibar, Lamia, Forrest, Leysa, Dyal, Patricia, Williams, Rachel J, Panchbhaya, Yasmin, Williams, Charlotte A, Roy, Sunando, Pandey, Sarojini, Stockton, Jo, Loman, Nicholas J, Poplawski, Radoslaw, Nicholls, Samuel, Rowe, W P M, Khokhar, Fahad, Pinckert, Malte Lars, Hosmillo, Myra, Chaudhry, Yasmin, Caller, Laura G, Davidson, Rose K, Griffith, Luke, Rambaut, Andrew, Jackson, Ben, Colquhoun, Rachel, Hill, Verity, Nichols, Jenna, Asamaphan, Patawee, Darby, Alistair, Jackson, Kathryn A, Iturriza-Gomara, Miren, Vamos, Ecaterina Edith, Green, Angie, Aanensen, David, Bonsall, David, Buck, David, Macintyre-Cockett, George, de Cesare, Mariateresa, Pybus, Oliver, Golubchik, Tanya, Scarlett, Garry, Loveson, Katie F, Robson, Samuel C, Beckett, Angela, Lindsey, Benjamin, Groves, Danielle C, Parsons, Paul J, Mchugh, Martin P, Barnes, James Daniel, Manso, Carmen F, Grammatopoulos, Dimitris, Menger, Katja Elisabeth, Harrison, Ewan, Gunson, Rory, Peacock, Sharon J, Gonzalez, Gabriel, Carr, Michael, Mihaela, Lazar, Popovici, Odette, Brytting, Mia, Bresner, Catherine, Fuller, William, Workman, Trudy, Mentis, Andreas F, Kossyvakis, Athanasios, Karamitros, Timokratis, Pogka, Vasiliki, Kalliaropoulos, Antonios, Horefti, Elina, Kontou, Aspasia, Martinez-Gonzalez, Beatriz, Labropoulou, Voula, Voulgari-Kokota, Androniki, Evangelidou, Maria, Bizta, Panagiota, Belimezi, Maria, Lambrechts, Laurens, Doymaz, Mehmet Z, Yazici, Merve Kalkan, Cetin, Nesibe S, Karaaslan, Elif, Kallio-Kokko, Hannimari, Virtanen, Jenni, Suvanto, Maija, Nguyen, Phuoc Truong, Ellonen, Pekka, Hannula, Sari, Kangas, Harri, Sreenu, Vattipally B, Burián, Katalin, Terhes, Gabriella, Gombos, Katalin, Gyenesei, Attila, Urbán, Péter, Herczeg, Róbert, Jakab, Ferenc, Kemenesi, Gábor, Tóth, Gábor Endre, Somogyi, Balázs, Zana, Brigitta, Zeghbib, Safia, Kuczmog, Anett, Földes, Fanni, Lanszki, Zsófia, Madai, Mónika, Papp, Henrietta, Nagy, Ágnes, Pereszlényi, Csaba István, Babinszky, Gergely Csaba, Dudás, Gábor, Csoma, Eszter, Abou Tayoun, Ahmad N, Alsheikh-Ali, Alawi A, Loney, Tom, Nowotny, Norbert, Abdul-Wahab, Osama, Gonzalez-Candelas, Fernando, Andersen, Martin H, Taylor, Sarah
Publicado 2020