Conserved noncoding transcription and core promoter regulatory code in early Drosophila development

por Batut, Philippe J, Gingeras, Thomas R
Publicado 2017

An effort to make sense of antisense transcription in bacteria

por Lasa, Iñigo, Toledo-Arana, Alejandro, Gingeras, Thomas R.
Publicado 2012

Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

por Zhang, Xiao-Ou, Gingeras, Thomas R., Weng, Zhiping
Publicado 2019

The fractured landscape of RNA-seq alignment: the default in our STARs

por Ballouz, Sara, Dobin, Alexander, Gingeras, Thomas R, Gillis, Jesse
Publicado 2018

Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment

por Nechooshtan, Gal, Yunusov, Dinar, Chang, Kenneth, Gingeras, Thomas R
Publicado 2020

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

por Batut, Philippe, Dobin, Alexander, Plessy, Charles, Carninci, Piero, Gingeras, Thomas R.
Publicado 2013

Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments

por Ghosh, Srinka, Hirsch, Heather A, Sekinger, Edward, Struhl, Kevin, Gingeras, Thomas R
Publicado 2006

Extracellular vesicle-mediated transfer of processed and functional RNY5 RNA

por Chakrabortty, Sudipto K., Prakash, Ashwin, Nechooshtan, Gal, Hearn, Stephen, Gingeras, Thomas R.
Publicado 2015

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements

por Schlesinger, Felix, Smith, Andrew D., Gingeras, Thomas R., Hannon, Gregory J., Hodges, Emily
Publicado 2013

Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation

por Livyatan, Ilana, Harikumar, Arigela, Nissim-Rafinia, Malka, Duttagupta, Radharani, Gingeras, Thomas R., Meshorer, Eran
Publicado 2013

Differential analysis for high density tiling microarray data

por Ghosh, Srinka, Hirsch, Heather A, Sekinger, Edward A, Kapranov, Philipp, Struhl, Kevin, Gingeras, Thomas R
Publicado 2007

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans

por Ramani, Arun K, Nelson, Andrew C, Kapranov, Philipp, Bell, Ian, Gingeras, Thomas R, Fraser, Andrew G
Publicado 2009

Genome-Wide Mapping Indicates That p73 and p63 Co-Occupy Target Sites and Have Similar DNA-Binding Profiles In Vivo

por Yang, Annie, Zhu, Zhou, Kettenbach, Arminja, Kapranov, Philipp, McKeon, Frank, Gingeras, Thomas R., Struhl, Kevin
Publicado 2010

A Genome-Wide Survey of Sexually Dimorphic Expression of Drosophila miRNAs Identifies the Steroid Hormone-Induced miRNA let-7 as a Regulator of Sexual Identity

por Fagegaltier, Delphine, König, Annekatrin, Gordon, Assaf, Lai, Eric C., Gingeras, Thomas R., Hannon, Gregory J., Shcherbata, Halyna R.
Publicado 2014

Reprogramming of the Macrophage Transcriptome in Response to Interferon-γ and Mycobacterium tuberculosis : Signaling Roles of Nitric Oxide Synthase-2 and Phagocyte Oxidase

por Ehrt, Sabine, Schnappinger, Dirk, Bekiranov, Stefan, Drenkow, Jörg, Shi, Shuangping, Gingeras, Thomas R., Gaasterland, Terry, Schoolnik, Gary, Nathan, Carl
Publicado 2001

Multiplicity of 5′ Cap Structures Present on Short RNAs

por Abdelhamid, Rehab F., Plessy, Charles, Yamauchi, Yoshio, Taoka, Masato, de Hoon, Michiel, Gingeras, Thomas R., Isobe, Toshiaki, Carninci, Piero
Publicado 2014

Gene-specific patterns of expression variation across organs and species

por Breschi, Alessandra, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri D., Dobin, Alex, Davis, Carrie A., Gingeras, Thomas R., Guigó, Roderic
Publicado 2016

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

por Tilgner, Hagen, Knowles, David G., Johnson, Rory, Davis, Carrie A., Chakrabortty, Sudipto, Djebali, Sarah, Curado, João, Snyder, Michael, Gingeras, Thomas R., Guigó, Roderic
Publicado 2012

MyD88 Primes Macrophages for Full-Scale Activation by Interferon-γ yet Mediates Few Responses to Mycobacterium tuberculosis

por Shi, Shuangping, Nathan, Carl, Schnappinger, Dirk, Drenkow, Jörg, Fuortes, Michele, Block, Ellen, Ding, Aihao, Gingeras, Thomas R., Schoolnik, Gary, Akira, Shizuo, Takeda, Kiyoshi, Ehrt, Sabine
Publicado 2003

Modeling gene expression using chromatin features in various cellular contexts

por Dong, Xianjun, Greven, Melissa C, Kundaje, Anshul, Djebali, Sarah, Brown, James B, Cheng, Chao, Gingeras, Thomas R, Gerstein, Mark, Guigó, Roderic, Birney, Ewan, Weng, Zhiping
Publicado 2012