Estimating the Timing of Early Simian-Human Immunodeficiency Virus Infections: a Comparison between Poisson Fitter and BEAST

por Giorgi, Elena E., Li, Hui, Bhattacharya, Tanmoy, Shaw, George M., Korber, Bette
Publicado 2020

Estimating time since infection in early homogeneous HIV-1 samples using a poisson model

por Giorgi, Elena E, Funkhouser, Bob, Athreya, Gayathri, Perelson, Alan S, Korber, Bette T, Bhattacharya, Tanmoy
Publicado 2010

Effect of epitope variant co-delivery on the depth of CD8 T cell responses induced by HIV-1 conserved mosaic vaccines

por Wee, Edmund G., Moyo, Nathifa, Hannoun, Zara, Giorgi, Elena E., Korber, Bette, Hanke, Tomáš
Publicado 2021

Transmission of Multiple HIV-1 Subtype C Transmitted/founder Viruses into the Same Recipients Was not Determined by Modest Phenotypic Differences

por Song, Hongshuo, Hora, Bhavna, Giorgi, Elena E., Kumar, Amit, Cai, Fangping, Bhattacharya, Tanmoy, Perelson, Alan S., Gao, Feng
Publicado 2016

Nef gene evolution from a single transmitted strain in acute SIV infection

por Bimber, Benjamin N, Chugh, Pauline, Giorgi, Elena E, Kim, Baek, Almudevar, Anthony L, Dewhurst, Stephen, O'Connor, David H, Lee, Ha Youn
Publicado 2009

Emergence of SARS-CoV-2 through recombination and strong purifying selection

por Li, Xiaojun, Giorgi, Elena E., Marichannegowda, Manukumar Honnayakanahalli, Foley, Brian, Xiao, Chuan, Kong, Xiang-Peng, Chen, Yue, Gnanakaran, S., Korber, Bette, Gao, Feng
Publicado 2020

Enhancement of Neutralization Responses through Sequential Immunization of Stable Env Trimers Based on Consensus Sequences from Select Time Points by Mimicking Natural Infection

por Wan, Mingming, Yang, Xiao, Sun, Jie, Giorgi, Elena E., Ding, Xue, Zhou, Yan, Zhang, Yong, Su, Weiheng, Jiang, Chunlai, Shan, Yaming, Gao, Feng
Publicado 2023

Mutations that confer resistance to broadly-neutralizing antibodies define HIV-1 variants of transmitting mothers from that of non-transmitting mothers

por Kumar, Amit, Giorgi, Elena E., Tu, Joshua J., Martinez, David R., Eudailey, Joshua, Mengual, Michael, Honnayakanahalli Marichannegowda, Manukumar, Van Dyke, Russell, Gao, Feng, Permar, Sallie R.
Publicado 2021

Genital Tract Sequestration of SIV following Acute Infection

por Whitney, James B., Hraber, Peter T., Luedemann, Corinne, Giorgi, Elena E., Daniels, Marcus G., Bhattacharya, Tanmoy, Rao, Srinivas S., Mascola, John R., Nabel, Gary J., Korber, Bette T., Letvin, Norman L.
Publicado 2011

Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence

por Ke, Ruian, Li, Hui, Wang, Shuyi, Ding, Wenge, Ribeiro, Ruy M., Giorgi, Elena E., Bhattacharya, Tanmoy, Barnard, Richard J. O., Hahn, Beatrice H., Shaw, George M., Perelson, Alan S.
Publicado 2018

Association between mitochondrial genetic variation and breast cancer risk: The Multiethnic Cohort

por Li, Yuqing, Giorgi, Elena E., Beckman, Kenneth B., Caberto, Christian, Kazma, Remi, Lum-Jones, Annette, Haiman, Christopher A., Marchand, Loïc Le, Stram, Daniel O., Saxena, Richa, Cheng, Iona
Publicado 2019

Different evolutionary pathways of HIV-1 between fetus and mother perinatal transmission pairs indicate unique immune selection in fetuses

por Marichannegowda, Manukumar Honnayakanahalli, Mengual, Michael, Kumar, Amit, Giorgi, Elena E., Tu, Joshua J., Martinez, David R., Romero-Severson, Ethan O., Li, Xiaojun, Feng, Liping, Permar, Sallie R., Gao, Feng
Publicado 2021

HIV Evolution in Early Infection: Selection Pressures, Patterns of Insertion and Deletion, and the Impact of APOBEC

por Wood, Natasha, Bhattacharya, Tanmoy, Keele, Brandon F., Giorgi, Elena, Liu, Michael, Gaschen, Brian, Daniels, Marcus, Ferrari, Guido, Haynes, Barton F., McMichael, Andrew, Shaw, George M., Hahn, Beatrice H., Korber, Bette, Seoighe, Cathal
Publicado 2009

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

por Fischer, Will, Giorgi, Elena E., Chakraborty, Srirupa, Nguyen, Kien, Bhattacharya, Tanmoy, Theiler, James, Goloboff, Pablo A., Yoon, Hyejin, Abfalterer, Werner, Foley, Brian T., Tegally, Houriiyah, San, James Emmanuel, de Oliveira, Tulio, Gnanakaran, Sandrasegaram, Korber, Bette
Publicado 2021

Induction of Neutralizing Responses against Autologous Virus in Maternal HIV Vaccine Trials

por Hompe, Eliza D., Mangold, Jesse F., Kumar, Amit, Eudailey, Joshua A., McGuire, Erin, Haynes, Barton F., Moody, M. Anthony, Wright, Peter F., Fouda, Genevieve G., Giorgi, Elena E., Gao, Feng, Permar, Sallie R.
Publicado 2020

Single-Genome Sequencing of Hepatitis C Virus in Donor-Recipient Pairs Distinguishes Modes and Models of Virus Transmission and Early Diversification

por Li, Hui, Stoddard, Mark B., Wang, Shuyi, Giorgi, Elena E., Blair, Lily M., Learn, Gerald H., Hahn, Beatrice H., Alter, Harvey J., Busch, Michael P., Fierer, Daniel S., Ribeiro, Ruy M., Perelson, Alan S., Bhattacharya, Tanmoy, Shaw, George M.
Publicado 2015

Infant transmitted/founder HIV-1 viruses from peripartum transmission are neutralization resistant to paired maternal plasma

por Kumar, Amit, Smith, Claire E. P., Giorgi, Elena E., Eudailey, Joshua, Martinez, David R., Yusim, Karina, Douglas, Ayooluwa O., Stamper, Lisa, McGuire, Erin, LaBranche, Celia C., Montefiori, David C., Fouda, Genevieve G., Gao, Feng, Permar, Sallie R.
Publicado 2018

Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1

por Keele, Brandon F., Li, Hui, Learn, Gerald H., Hraber, Peter, Giorgi, Elena E., Grayson, Truman, Sun, Chuanxi, Chen, Yalu, Yeh, Wendy W., Letvin, Norman L., Mascola, John R., Nabel, Gary J., Haynes, Barton F., Bhattacharya, Tanmoy, Perelson, Alan S., Korber, Bette T., Hahn, Beatrice H., Shaw, George M.
Publicado 2009

Elucidation of Hepatitis C Virus Transmission and Early Diversification by Single Genome Sequencing

por Li, Hui, Stoddard, Mark B., Wang, Shuyi, Blair, Lily M., Giorgi, Elena E., Parrish, Erica H., Learn, Gerald H., Hraber, Peter, Goepfert, Paul A., Saag, Michael S., Denny, Thomas N., Haynes, Barton F., Hahn, Beatrice H., Ribeiro, Ruy M., Perelson, Alan S., Korber, Bette T., Bhattacharya, Tanmoy, Shaw, George M.
Publicado 2012

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

por Hraber, Peter, Korber, Bette, Wagh, Kshitij, Giorgi, Elena E., Bhattacharya, Tanmoy, Gnanakaran, S., Lapedes, Alan S., Learn, Gerald H., Kreider, Edward F., Li, Yingying, Shaw, George M., Hahn, Beatrice H., Montefiori, David C., Alam, S. Munir, Bonsignori, Mattia, Moody, M. Anthony, Liao, Hua-Xin, Gao, Feng, Haynes, Barton F.
Publicado 2015