Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale

por Girgis, Hani Z.
Publicado 2015

MeShClust v3.0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores

por Girgis, Hani Z.
Publicado 2022

Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs

por Girgis, Hani Z, Ovcharenko, Ivan
Publicado 2012

MsDetector: toward a standard computational tool for DNA microsatellites detection

por Girgis, Hani Z., Sheetlin, Sergey L.
Publicado 2013

LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo

por Valencia, Joseph D., Girgis, Hani Z.
Publicado 2019

MeShClust: an intelligent tool for clustering DNA sequences

por James, Benjamin T, Luczak, Brian B, Girgis, Hani Z
Publicado 2018

HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures

por Girgis, Hani Z., Velasco, Alfredo, Reyes, Zachary E.
Publicado 2018

A survey and evaluations of histogram-based statistics in alignment-free sequence comparison

por Luczak, Brian B, James, Benjamin T, Girgis, Hani Z
Publicado 2017

Identity: rapid alignment-free prediction of sequence alignment identity scores using self-supervised general linear models

por Girgis, Hani Z, James, Benjamin T, Luczak, Brian B
Publicado 2021

Benchmarking of alignment-free sequence comparison methods

por Zielezinski, Andrzej, Girgis, Hani Z., Bernard, Guillaume, Leimeister, Chris-Andre, Tang, Kujin, Dencker, Thomas, Lau, Anna Katharina, Röhling, Sophie, Choi, Jae Jin, Waterman, Michael S., Comin, Matteo, Kim, Sung-Hou, Vinga, Susana, Almeida, Jonas S., Chan, Cheong Xin, James, Benjamin T., Sun, Fengzhu, Morgenstern, Burkhard, Karlowski, Wojciech M.
Publicado 2019