MEDEA: analysis of transcription factor binding motifs in accessible chromatin

por Mariani, Luca, Weinand, Kathryn, Gisselbrecht, Stephen S., Bulyk, Martha L.
Publicado 2020

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein–DNA interactions

por Hume, Maxwell A., Barrera, Luis A., Gisselbrecht, Stephen S., Bulyk, Martha L.
Publicado 2014

Two Forkhead transcription factors regulate cardiac progenitor specification by controlling the expression of receptors of the fibroblast growth factor and Wnt signaling pathways

por Ahmad, Shaad M., Bhattacharyya, Pritha, Jeffries, Neal, Gisselbrecht, Stephen S., Michelson, Alan M.
Publicado 2016

Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue

por Waters, Colin T., Gisselbrecht, Stephen S., Sytnikova, Yuliya A., Cafarelli, Tiziana M., Hill, David E., Bulyk, Martha L.
Publicado 2021

Altered binding affinity of SIX1-Q177R correlates with enhanced WNT5A and WNT pathway effector expression in Wilms tumor

por Stevenson, Matthew J., Phanor, Sabrina K., Patel, Urvi, Gisselbrecht, Stephen S., Bulyk, Martha L., O'Brien, Lori L.
Publicado 2023

Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells

por Philippakis, Anthony A, Busser, Brian W, Gisselbrecht, Stephen S, He, Fangxue Sherry, Estrada, Beatriz, Michelson, Alan M, Bulyk, Martha L
Publicado 2006

Contribution of Distinct Homeodomain DNA Binding Specificities to Drosophila Embryonic Mesodermal Cell-Specific Gene Expression Programs

por Busser, Brian W., Gisselbrecht, Stephen S., Shokri, Leila, Tansey, Terese R., Gamble, Caitlin E., Bulyk, Martha L., Michelson, Alan M.
Publicado 2013

Using a structural and logics systems approach to infer bHLH–DNA binding specificity determinants

por De Masi, Federico, Grove, Christian A., Vedenko, Anastasia, Alibés, Andreu, Gisselbrecht, Stephen S., Serrano, Luis, Bulyk, Martha L., Walhout, Albertha J. M.
Publicado 2011

An Integrated Strategy for Analyzing the Unique Developmental Programs of Different Myoblast Subtypes

por Estrada, Beatriz, Choe, Sung E, Gisselbrecht, Stephen S, Michaud, Sebastien, Raj, Lakshmi, Busser, Brian W, Halfon, Marc S, Church, George M, Michelson, Alan M
Publicado 2006

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity

por Busser, Brian W., Shokri, Leila, Jaeger, Savina A., Gisselbrecht, Stephen S., Singhania, Aditi, Berger, Michael F., Zhou, Bo, Bulyk, Martha L., Michelson, Alan M.
Publicado 2012

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

por Shokri, Leila, Inukai, Sachi, Hafner, Antonina, Weinand, Kathryn, Hens, Korneel, Vedenko, Anastasia, Gisselbrecht, Stephen S., Dainese, Riccardo, Bischof, Johannes, Furger, Edy, Feuz, Jean-Daniel, Basler, Konrad, Deplancke, Bart, Bulyk, Martha L.
Publicado 2019

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

por Gisselbrecht, Stephen S., Barrera, Luis A., Porsch, Martin, Aboukhalil, Anton, Estep, Preston W., Vedenko, Anastasia, Palagi, Alexandre, Kim, Yongsok, Zhu, Xianmin, Busser, Brian W., Gamble, Caitlin E., Iagovitina, Antonina, Singhania, Aditi, Michelson, Alan M., Bulyk, Martha L.
Publicado 2013

The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain

por Weber, Lisa Marie, Jia, Yulin, Stielow, Bastian, Gisselbrecht, Stephen S, Cao, Yinghua, Ren, Yanpeng, Rohner, Iris, King, Jessica, Rothman, Elisabeth, Fischer, Sabrina, Simon, Clara, Forné, Ignasi, Nist, Andrea, Stiewe, Thorsten, Bulyk, Martha L, Wang, Zhanxin, Liefke, Robert
Publicado 2022