Inferring the heritability of bacterial traits in the era of machine learning

por Mai, T Tien, Lees, John A, Gladstone, Rebecca A, Corander, Jukka
Publicado 2023

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

por Tonkin-Hill, Gerry, Gladstone, Rebecca A., Pöntinen, Anna K., Arredondo-Alonso, Sergio, Bentley, Stephen D., Corander, Jukka
Publicado 2023

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

por Epping, Lennard, van Tonder, Andries J., Gladstone, Rebecca A., Bentley, Stephen D., Page, Andrew J., Keane, Jacqueline A.
Publicado 2018

Pre-vaccine serotype composition within a lineage signposts its serotype replacement – a carriage study over 7 years following pneumococcal conjugate vaccine use in the UK

por Gladstone, Rebecca A., Devine, Vanessa, Jones, Jessica, Cleary, David, Jefferies, Johanna M., Bentley, Stephen D., Faust, Saul N., Clarke, Stuart C.
Publicado 2017

A high-throughput multiplexing and selection strategy to complete bacterial genomes

por Arredondo-Alonso, Sergio, Pöntinen, Anna K, Cléon, François, Gladstone, Rebecca A, Schürch, Anita C, Johnsen, Pål J, Samuelsen, Ørjan, Corander, Jukka
Publicado 2021

Effect on nasopharyngeal pneumococcal carriage of replacing PCV7 with PCV13 in the Expanded Programme of Immunization in The Gambia

por Roca, Anna, Bojang, Abdoulie, Bottomley, Christian, Gladstone, Rebecca A., Adetifa, Jane U., Egere, Uzochukwu, Burr, Sarah, Antonio, Martin, Bentley, Stephen, Kampmann, Beate
Publicado 2015

Comparative Genomics of Carriage and Disease Isolates of Streptococcus pneumoniae Serotype 22F Reveals Lineage-Specific Divergence and Niche Adaptation

por Cleary, David W., Devine, Vanessa T., Jefferies, Johanna M.C., Webb, Jeremy S., Bentley, Stephen D., Gladstone, Rebecca A., Faust, Saul N., Clarke, Stuart C.
Publicado 2016

Corrigendum: Pneumococcal vaccine impacts on the population genomics of non-typeable Haemophilus influenzae

por Cleary, David W., Devine, Vanessa T., Morris, Denise E., Osman, Karen L., Gladstone, Rebecca A., Bentley, Stephen D., Faust, Saul N., Clarke, Stuart C.
Publicado 2021

Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction

por Gladstone, Rebecca A., Jefferies, Johanna M., Tocheva, Anna S., Beard, Kate R., Garley, David, Chong, Wei Wei, Bentley, Stephen D., Faust, Saul N., Clarke, Stuart C.
Publicado 2015

Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018

por Cleary, David W., Jones, Jessica, Gladstone, Rebecca A., Osman, Karen L., Devine, Vanessa T., Jefferies, Johanna M., Bentley, Stephen D., Faust, Saul N., Clarke, Stuart C.
Publicado 2022

Fast and flexible bacterial genomic epidemiology with PopPUNK

por Lees, John A., Harris, Simon R., Tonkin-Hill, Gerry, Gladstone, Rebecca A., Lo, Stephanie W., Weiser, Jeffrey N., Corander, Jukka, Bentley, Stephen D., Croucher, Nicholas J.
Publicado 2019

Mge-cluster: a reference-free approach for typing bacterial plasmids

por Arredondo-Alonso, Sergio, Gladstone, Rebecca A, Pöntinen, Anna K, Gama, João A, Schürch, Anita C, Lanza, Val F, Johnsen, Pål Jarle, Samuelsen, Ørjan, Tonkin-Hill, Gerry, Corander, Jukka
Publicado 2023

Clonal Expansion within Pneumococcal Serotype 6C after Use of Seven-Valent Vaccine

por Loman, Nicholas J., Gladstone, Rebecca A., Constantinidou, Chrystala, Tocheva, Anna S., Jefferies, Johanna M. C., Faust, Saul N., O’Connor, Leigh, Chan, Jacqueline, Pallen, Mark J., Clarke, Stuart C.
Publicado 2013

Mass drug administration with azithromycin for trachoma elimination and the population structure of Streptococcus pneumoniae in the nasopharynx

por Gladstone, Rebecca A., Bojang, Ebrima, Hart, John, Harding-Esch, Emma M., Mabey, David, Sillah, Ansumana, Bailey, Robin L., Burr, Sarah E., Roca, Anna, Bentley, Stephen D., Holland, Martin J.
Publicado 2021

Population genetic structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in children in Argentina

por Gagetti, Paula, Lo, Stephanie W., Hawkins, Paulina A., Gladstone, Rebecca A., Regueira, Mabel, Faccone, Diego, Klugman, Keith P., Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Corso, Alejandra
Publicado 2021

Strong pathogen competition in neonatal gut colonisation

por Mäklin, Tommi, Thorpe, Harry A., Pöntinen, Anna K., Gladstone, Rebecca A., Shao, Yan, Pesonen, Maiju, McNally, Alan, Johnsen, Pål J., Samuelsen, Ørjan, Lawley, Trevor D., Honkela, Antti, Corander, Jukka
Publicado 2022

A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus

por Ganaie, Feroze, Saad, Jamil S., McGee, Lesley, van Tonder, Andries J., Bentley, Stephen D., Lo, Stephanie W., Gladstone, Rebecca A., Turner, Paul, Keenan, Jeremy D., Breiman, Robert F., Nahm, Moon H.
Publicado 2020

Streptococcus pneumoniae genomic datasets from an Indian population describing pre-vaccine evolutionary epidemiology using a whole genome sequencing approach

por Nagaraj, Geetha, Govindan, Vandana, Ganaie, Feroze, Venkatesha, V. T., Hawkins, Paulina A., Gladstone, Rebecca A., McGee, Lesley, Breiman, Robert F., Bentley, Stephen D., Klugman, Keith P., Lo, Stephanie W., Ravikumar, K. L.
Publicado 2021

Genomic surveillance of invasive Streptococcus pneumoniae isolates in the period pre-PCV10 and post-PCV10 introduction in Brazil

por Almeida, Samanta C. G., Lo, Stephanie W., Hawkins, Paulina A., Gladstone, Rebecca A., Cassiolato, Ana Paula, Klugman, Keith P., Breiman, Robert F., Bentley, Stephen D., McGee, Lesley, Brandileone, Maria-Cristina de C.
Publicado 2021

Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011–2018 determined through whole-genome sequencing

por Egorova, Ekaterina, Kumar, Narender, Gladstone, Rebecca A., Urban, Yulia, Voropaeva, Elena, Chaplin, A.V., Rumiantseva, Elena, Svistunova, T. S., Hawkins, Paulina A., Klugman, Keith P., Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Lo, Stephanie W.
Publicado 2022