Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes

por Melnikov, Alexandre, Rogov, Peter, Wang, Li, Gnirke, Andreas, Mikkelsen, Tarjei S.
Publicado 2014

Targeted bisulfite sequencing of the dynamic DNA methylome

por Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander
Publicado 2016

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

por Meissner, Alexander, Gnirke, Andreas, Bell, George W., Ramsahoye, Bernard, Lander, Eric S., Jaenisch, Rudolf
Publicado 2005

A unique regulatory phase of DNA methylation in the early mammalian embryo

por Smith, Zachary D., Chan, Michelle M., Mikkelsen, Tarjei S., Gu, Hongcang, Gnirke, Andreas, Regev, Aviv, Meissner, Alexander
Publicado 2012

Comprehensive comparative analysis of strand-specific RNA sequencing methods

por Levin, Joshua Z., Yassour, Moran, Adiconis, Xian, Nusbaum, Chad, Thompson, Dawn Anne, Friedman, Nir, Gnirke, Andreas, Regev, Aviv
Publicado 2010

Transcription factor binding dynamics during human ESC differentiation

por Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Publicado 2015

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

por Gu, Hongcang, Bock, Christoph, Mikkelsen, Tarjei S., Jäger, Natalie, Smith, Zachary D., Tomazou, Eleni, Gnirke, Andreas, Lander, Eric S., Meissner, Alexander
Publicado 2010

Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer

por Smith, Zachary D., Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacciarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander
Publicado 2017

Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen

por Shea, Terrance, Mohabir, Jason T., Kurbessoian, Tania, Berdy, Brittany, Fontaine, James, Gnirke, Andreas, Livny, Jonathan, Stajich, Jason E., Cuomo, Christina A.
Publicado 2023

Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

por Yassour, Moran, Pfiffner, Jenna, Levin, Joshua Z, Adiconis, Xian, Gnirke, Andreas, Nusbaum, Chad, Thompson, Dawn-Anne, Friedman, Nir, Regev, Aviv
Publicado 2010

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

por van Berkum, Nynke L., Lieberman-Aiden, Erez, Williams, Louise, Imakaev, Maxim, Gnirke, Andreas, Mirny, Leonid A., Dekker, Job, Lander, Eric S.
Publicado 2010

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

por Levin, Joshua Z, Berger, Michael F, Adiconis, Xian, Rogov, Peter, Melnikov, Alexandre, Fennell, Timothy, Nusbaum, Chad, Garraway, Levi A, Gnirke, Andreas
Publicado 2009

Analyzing and minimizing bias in Illumina sequencing libraries

por Aird, Daniel, Chen, Wei-Shen, Ross, Michael, Connolly, Kristen, Meldrim, Jim, Russ, Carsten, Fisher, Sheila, Jaffe, David, Nusbaum, Chad, Gnirke, Andreas
Publicado 2010

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

por Aird, Daniel, Ross, Michael G, Chen, Wei-Sheng, Danielsson, Maxwell, Fennell, Timothy, Russ, Carsten, Jaffe, David B, Nusbaum, Chad, Gnirke, Andreas
Publicado 2011

Development and evaluation of RNA-seq methods

por Levin, Joshua, Adiconis, Xian, Yassour, Moran, Thompson, Dawn, Guttman, Mitchell, Berger, Michael, Fan, Lin, Friedman, Nir, Nusbaum, Chad, Gnirke, Andreas, Regev, Aviv
Publicado 2010

Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

por Ciulla, Dawn, Giannoukos, Georgia, Earl, Ashlee, Feldgarden, Michael, Gevers, Dirk, Levin, Joshua, Livny, Jonathan, Ward, Doyle, Gnirke, Andreas, Nusbaum, Chad, Birren, Bruce
Publicado 2010

Genome-wide mapping of DNA methylation: a quantitative technology comparison

por Bock, Christoph, Tomazou, Eleni M., Brinkman, Arjen, Müller, Fabian, Simmer, Femke, Gu, Hongcang, Jäger, Natalie, Gnirke, Andreas, Stunnenberg, Hendrik G., Meissner, Alexander
Publicado 2010

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

por Boyle, Patrick, Clement, Kendell, Gu, Hongcang, Smith, Zachary D, Ziller, Michael, Fostel, Jennifer L, Holmes, Laurie, Meldrim, Jim, Kelley, Fontina, Gnirke, Andreas, Meissner, Alexander
Publicado 2012

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

por Rabani, Michal, Levin, Joshua Z, Fan, Lin, Adiconis, Xian, Raychowdhury, Raktima, Garber, Manuel, Gnirke, Andreas, Nusbaum, Chad, Hacohen, Nir, Friedman, Nir, Amit, Ido, Regev, Aviv
Publicado 2011

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

por Brinkman, Arie B., Gu, Hongcang, Bartels, Stefanie J.J., Zhang, Yingying, Matarese, Filomena, Simmer, Femke, Marks, Hendrik, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander, Stunnenberg, Hendrik G.
Publicado 2012