Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

por Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang, Wing, Rod A.
Publicado 2016

Fluorescence In Situ Hybridization and Optical Mapping to Correct Scaffold Arrangement in the Tomato Genome

por Shearer, Lindsay A., Anderson, Lorinda K., de Jong, Hans, Smit, Sandra, Goicoechea, José Luis, Roe, Bruce A., Hua, Axin, Giovannoni, James J., Stack, Stephen M.
Publicado 2014

An Integrated Physical, Genetic and Cytogenetic Map of Brachypodium distachyon, a Model System for Grass Research

por Febrer, Melanie, Goicoechea, Jose Luis, Wright, Jonathan, McKenzie, Neil, Song, Xiang, Lin, Jinke, Collura, Kristi, Wissotski, Marina, Yu, Yeisoo, Ammiraju, Jetty S. S., Wolny, Elzbieta, Idziak, Dominika, Betekhtin, Alexander, Kudrna, Dave, Hasterok, Robert, Wing, Rod A., Bevan, Michael W.
Publicado 2010

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

por Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, Mullikin, James C, Maher, Christopher, Nelson, William, Wissotski, Marina, Braidotti, Michele, Kudrna, David, Goicoechea, José Luis, Stein, Lincoln, Ware, Doreen, Jackson, Scott A, Soderlund, Carol, Wing, Rod A
Publicado 2008

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

por Hass-Jacobus, Barbara L, Futrell-Griggs, Montona, Abernathy, Brian, Westerman, Rick, Goicoechea, Jose-Luis, Stein, Joshua, Klein, Patricia, Hurwitz, Bonnie, Zhou, Bin, Rakhshan, Fariborz, Sanyal, Abhijit, Gill, Navdeep, Lin, Jer-Young, Walling, Jason G, Luo, Mei Zhong, Ammiraju, Jetty Siva S, Kudrna, Dave, Kim, Hye Ran, Ware, Doreen, Wing, Rod A, Miguel, Phillip San, Jackson, Scott A
Publicado 2006

Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History

por Wei, Fusheng, Coe, Ed, Nelson, William, Bharti, Arvind K, Engler, Fred, Butler, Ed, Kim, HyeRan, Goicoechea, Jose Luis, Chen, Mingsheng, Lee, Seunghee, Fuks, Galina, Sanchez-Villeda, Hector, Schroeder, Steven, Fang, Zhiwei, McMullen, Michael, Davis, Georgia, Bowers, John E, Paterson, Andrew H, Schaeffer, Mary, Gardiner, Jack, Cone, Karen, Messing, Joachim, Soderlund, Carol, Wing, Rod A
Publicado 2007

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

por Zhang, Jianwei, Chen, Ling-Ling, Sun, Shuai, Kudrna, Dave, Copetti, Dario, Li, Weiming, Mu, Ting, Jiao, Wen-Biao, Xing, Feng, Lee, Seunghee, Talag, Jayson, Song, Jia-Ming, Du, Bogu, Xie, Weibo, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa
Publicado 2016

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

por Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S S, Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, de Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, Machado, Carlos A, Chen, Mingsheng, Mayer, Klaus F X, Rounsley, Steve, Wing, Rod A
Publicado 2014

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

por Zuccolo, Andrea, Bowers, John E, Estill, James C, Xiong, Zhiyong, Luo, Meizhong, Sebastian, Aswathy, Goicoechea, José Luis, Collura, Kristi, Yu, Yeisoo, Jiao, Yuannian, Duarte, Jill, Tang, Haibao, Ayyampalayam, Saravanaraj, Rounsley, Steve, Kudrna, Dave, Paterson, Andrew H, Pires, J Chris, Chanderbali, Andre, Soltis, Douglas E, Chamala, Srikar, Barbazuk, Brad, Soltis, Pamela S, Albert, Victor A, Ma, Hong, Mandoli, Dina, Banks, Jody, Carlson, John E, Tomkins, Jeffrey, dePamphilis, Claude W, Wing, Rod A, Leebens-Mack, Jim
Publicado 2011