Time warping of evolutionary distant temporal gene expression data based on noise suppression

por Goltsev, Yury, Papatsenko, Dmitri
Publicado 2009

Organization of developmental enhancers in the Drosophila embryo

por Papatsenko, Dmitri, Goltsev, Yury, Levine, Michael
Publicado 2009

Clusters of Temporal Discordances Reveal Distinct Embryonic Patterning Mechanisms in Drosophila and Anopheles

por Papatsenko, Dmitri, Levine, Michael, Goltsev, Yury
Publicado 2011

Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data

por Hickey, John W., Tan, Yuqi, Nolan, Garry P., Goltsev, Yury
Publicado 2021

Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging

por Goltsev, Yury, Samusik, Nikolay, Kennedy-Darling, Julia, Bhate, Salil, Hale, Matthew, Vazquez, Gustavo, Black, Sarah, Nolan, Garry P.
Publicado 2018

SARS-CoV-2 entry factors are expressed in nasal, ocular, and oral tissues: implications for COVID-19 prophylaxes/therapeutics

por Lee, Ivan, Nakayama, Tsuguhisa, Jiang, Sizun, Goltsev, Yury, Schürch, Christian, Zhu, Bokai, McIlwain, David, Chu, Pauline, Chen, Han, Tzankov, Alexandar, Matter, Matthias, Nayak, Jayakar, Nolan, Garry
Publicado 2021

A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data

por Lu, Guolan, Baertsch, Marc A., Hickey, John W., Goltsev, Yury, Rech, Andrew J., Mani, Lucas, Forgó, Erna, Kong, Christina, Jiang, Sizun, Nolan, Garry P., Rosenthal, Eben L.
Publicado 2022

Highly multiplexed tissue imaging using repeated oligonucleotide exchange reaction

por Kennedy‐Darling, Julia, Bhate, Salil S., Hickey, John W., Black, Sarah, Barlow, Graham L., Vazquez, Gustavo, Venkataraaman, Vishal G., Samusik, Nikolay, Goltsev, Yury, Schürch, Christian M., Nolan, Garry P.
Publicado 2021

Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front

por Schürch, Christian M., Bhate, Salil S., Barlow, Graham L., Phillips, Darci J., Noti, Luca, Zlobec, Inti, Chu, Pauline, Black, Sarah, Demeter, Janos, McIlwain, David R., Samusik, Nikolay, Goltsev, Yury, Nolan, Garry P.
Publicado 2020

Robust single-cell matching and multimodal analysis using shared and distinct features

por Zhu, Bokai, Chen, Shuxiao, Bai, Yunhao, Chen, Han, Liao, Guanrui, Mukherjee, Nilanjan, Vazquez, Gustavo, McIlwain, David R., Tzankov, Alexandar, Lee, Ivan T., Matter, Matthias S., Goltsev, Yury, Ma, Zongming, Nolan, Garry P., Jiang, Sizun
Publicado 2023

Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front

por Schürch, Christian M., Bhate, Salil S., Barlow, Graham L., Phillips, Darci J., Noti, Luca, Zlobec, Inti, Chu, Pauline, Black, Sarah, Demeter, Janos, McIlwain, David R., Kinoshita, Shigemi, Samusik, Nikolay, Goltsev, Yury, Nolan, Garry P.
Publicado 2020

Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma

por Phillips, Darci, Matusiak, Magdalena, Gutierrez, Belén Rivero, Bhate, Salil S., Barlow, Graham L., Jiang, Sizun, Demeter, Janos, Smythe, Kimberly S., Pierce, Robert H., Fling, Steven P., Ramchurren, Nirasha, Cheever, Martin A., Goltsev, Yury, West, Robert B., Khodadoust, Michael S., Kim, Youn H., Schürch, Christian M., Nolan, Garry P.
Publicado 2021

Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis

por O’Huallachain, Maeve, Bava, Felice-Alessio, Shen, Mary, Dallett, Carolina, Paladugu, Sri, Samusik, Nikolay, Yu, Simon, Hussein, Razika, Hillman, Grantland R., Higgins, Samual, Lou, Melanie, Trejo, Angelica, Qin, Laura, Tai, Yu Chuan, Kinoshita, Shigemi M., Jager, Astraea, Lashkari, Deval, Goltsev, Yury, Ozturk, Sedide, Nolan, Garry P.
Publicado 2020

Author Correction: Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis

por O’Huallachain, Maeve, Bava, Felice-Alessio, Shen, Mary, Dallett, Carolina, Paladugu, Sri, Samusik, Nikolay, Yu, Simon, Hussein, Razika, Hillman, Grantland R., Higgins, Samuel, Lou, Melanie, Trejo, Angelica, Qin, Laura, Tai, Yu Chuan, Kinoshita, Shigemi M., Jager, Astraea, Lashkari, Deval, Goltsev, Yury, Ozturk, Sedide, Nolan, Garry P.
Publicado 2020

SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment

por Wu, Chien-Ting, Lidsky, Peter V., Xiao, Yinghong, Lee, Ivan T., Cheng, Ran, Nakayama, Tsuguhisa, Jiang, Sizun, Demeter, Janos, Bevacqua, Romina J., Chang, Charles A., Whitener, Robert L., Stalder, Anna K., Zhu, Bokai, Chen, Han, Goltsev, Yury, Tzankov, Alexandar, Nayak, Jayakar V., Nolan, Garry P., Matter, Matthias S., Andino, Raul, Jackson, Peter K.
Publicado 2021

Rhesus Macaque CODEX Multiplexed Immunohistochemistry Panel for Studying Immune Responses During Ebola Infection

por Jiang, Sizun, Mukherjee, Nilanjan, Bennett, Richard S., Chen, Han, Logue, James, Dighero-Kemp, Bonnie, Kurtz, Jonathan R., Adams, Ricky, Phillips, Darci, Schürch, Christian M., Goltsev, Yury, Hickey, John W., McCaffrey, Erin F., Delmastro, Alea, Chu, Pauline, Reader, J. Rachel, Keesler, Rebekah I., Galván, José A., Zlobec, Inti, Van Rompay, Koen K. A., Liu, David X., Hensley, Lisa E., Nolan, Garry P., McIlwain, David R.
Publicado 2021

Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments

por Jiang, Sizun, Chan, Chi Ngai, Rovira-Clavé, Xavier, Chen, Han, Bai, Yunhao, Zhu, Bokai, McCaffrey, Erin, Greenwald, Noah F., Liu, Candace, Barlow, Graham L., Weirather, Jason L., Oliveria, John Paul, Nakayama, Tsuguhisa, Lee, Ivan T., Matter, Matthias S., Carlisle, Anne E., Philips, Darci, Vazquez, Gustavo, Mukherjee, Nilanjan, Busman-Sahay, Kathleen, Nekorchuk, Michael, Terry, Margaret, Younger, Skyler, Bosse, Marc, Demeter, Janos, Rodig, Scott J., Tzankov, Alexandar, Goltsev, Yury, McIlwain, David Robert, Angelo, Michael, Estes, Jacob D., Nolan, Garry P.
Publicado 2022

Robust ACE2 protein expression localizes to the motile cilia of the respiratory tract epithelia and is not increased by ACE inhibitors or angiotensin receptor blockers

por Lee, Ivan T., Nakayama, Tsuguhisa, Wu, Chien-Ting, Goltsev, Yury, Jiang, Sizun, Gall, Phillip A., Liao, Chun-Kang, Shih, Liang-Chun, Schürch, Christian M., McIlwain, David R., Chu, Pauline, Borchard, Nicole A., Zarabanda, David, Dholakia, Sachi S., Yang, Angela, Kim, Dayoung, Kanie, Tomoharu, Lin, Chia-Der, Tsai, Ming-Hsui, Phillips, Katie M., Kim, Raymond, Overdevest, Jonathan B., Tyler, Matthew A., Yan, Carol H., Lin, Chih-Feng, Lin, Yi-Tsen, Bau, Da-Tian, Tsay, Gregory J., Patel, Zara M., Tsou, Yung-An, Tai, Chih-Jaan, Yeh, Te-Huei, Hwang, Peter H., Nolan, Garry P., Nayak, Jayakar V., Jackson, Peter K.
Publicado 2020

ACE2 localizes to the respiratory cilia and is not increased by ACE inhibitors or ARBs

por Lee, Ivan T., Nakayama, Tsuguhisa, Wu, Chien-Ting, Goltsev, Yury, Jiang, Sizun, Gall, Phillip A., Liao, Chun-Kang, Shih, Liang-Chun, Schürch, Christian M., McIlwain, David R., Chu, Pauline, Borchard, Nicole A., Zarabanda, David, Dholakia, Sachi S., Yang, Angela, Kim, Dayoung, Chen, Han, Kanie, Tomoharu, Lin, Chia-Der, Tsai, Ming-Hsui, Phillips, Katie M., Kim, Raymond, Overdevest, Jonathan B., Tyler, Matthew A., Yan, Carol H., Lin, Chih-Feng, Lin, Yi-Tsen, Bau, Da-Tian, Tsay, Gregory J., Patel, Zara M., Tsou, Yung-An, Tzankov, Alexandar, Matter, Matthias S., Tai, Chih-Jaan, Yeh, Te-Huei, Hwang, Peter H., Nolan, Garry P., Nayak, Jayakar V., Jackson, Peter K.
Publicado 2020

Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers

por Nakayama, Tsuguhisa, Lee, Ivan T., Jiang, Sizun, Matter, Matthias S., Yan, Carol H., Overdevest, Jonathan B., Wu, Chien-Ting, Goltsev, Yury, Shih, Liang-Chun, Liao, Chun-Kang, Zhu, Bokai, Bai, Yunhao, Lidsky, Peter, Xiao, Yinghong, Zarabanda, David, Yang, Angela, Easwaran, Meena, Schürch, Christian M., Chu, Pauline, Chen, Han, Stalder, Anna K., McIlwain, David R., Borchard, Nicole A., Gall, Phillip A., Dholakia, Sachi S., Le, Wei, Xu, Le, Tai, Chih-Jaan, Yeh, Te-Huei, Erickson-Direnzo, Elizabeth, Duran, Jason M., Mertz, Kirsten D., Hwang, Peter H., Haslbauer, Jasmin D., Jackson, Peter K., Menter, Thomas, Andino, Raul, Canoll, Peter D., DeConde, Adam S., Patel, Zara M., Tzankov, Alexandar, Nolan, Garry P., Nayak, Jayakar V.
Publicado 2021