Genome and metabolome: chance and necessity

por Gonçalves, Emanuel, Frezza, Christian
Publicado 2021

Cyrface: An interface from Cytoscape to R that provides a user interface to R packages

por Gonçalves, Emanuel, Mirlach, Franz, Saez-Rodriguez, Julio
Publicado 2014

CySBGN: A Cytoscape plug-in to integrate SBGN maps

por Gonçalves, Emanuel, Iersel, Martijn van, Saez-Rodriguez, Julio
Publicado 2013

DNA methylation fingerprint of hepatocellular carcinoma from tissue and liquid biopsies

por Gonçalves, Emanuel, Gonçalves-Reis, Maria, Pereira-Leal, José B., Cardoso, Joana
Publicado 2022

Benchmarking substrate-based kinase activity inference using phosphoproteomic data

por Hernandez-Armenta, Claudia, Ochoa, David, Gonçalves, Emanuel, Saez-Rodriguez, Julio, Beltrao, Pedro
Publicado 2017

Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels

por Sousa, Abel, Gonçalves, Emanuel, Mirauta, Bogdan, Ochoa, David, Stegle, Oliver, Beltrao, Pedro
Publicado 2019

High Interannual Variability in Connectivity and Genetic Pool of a Temperate Clingfish Matches Oceanographic Transport Predictions

por Klein, Maria, Teixeira, Sara, Assis, Jorge, Serrão, Ester A., Gonçalves, Emanuel J., Borges, Rita
Publicado 2016

Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in Cancer

por Gonçalves, Emanuel, Fragoulis, Athanassios, Garcia-Alonso, Luz, Cramer, Thorsten, Saez-Rodriguez, Julio, Beltrao, Pedro
Publicado 2017

Soft-bottom fishes and spatial protection: findings from a temperate marine protected area

por Sousa, Inês, Gonçalves, Jorge M.S., Claudet, Joachim, Coelho, Rui, Gonçalves, Emanuel J., Erzini, Karim
Publicado 2018

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data

por Pacini, Clare, Iorio, Francesco, Gonçalves, Emanuel, Iskar, Murat, Klabunde, Thomas, Bork, Peer, Saez-Rodriguez, Julio
Publicado 2013

The pharmacoepigenomic landscape of cancer cell lines reveals the epigenetic component of drug sensitivity

por Ohnmacht, Alexander Joschua, Rajamani, Anantharamanan, Avar, Göksu, Kutkaite, Ginte, Gonçalves, Emanuel, Saur, Dieter, Menden, Michael Patrick
Publicado 2023

Contrasts in the marine ecosystem of two Macaronesian islands: A comparison between the remote Selvagens Reserve and Madeira Island

por Friedlander, Alan M., Ballesteros, Enric, Clemente, Sabrina, Gonçalves, Emanuel J., Estep, Andrew, Rose, Paul, Sala, Enric
Publicado 2017

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast

por Gonçalves, Emanuel, Raguz Nakic, Zrinka, Zampieri, Mattia, Wagih, Omar, Ochoa, David, Sauer, Uwe, Beltrao, Pedro, Saez-Rodriguez, Julio
Publicado 2017

Fishers’ Behaviour in Response to the Implementation of a Marine Protected Area

por Horta e Costa, Bárbara, Batista, Marisa I., Gonçalves, Leonel, Erzini, Karim, Caselle, Jennifer E., Cabral, Henrique N., Gonçalves, Emanuel J.
Publicado 2013

Cryptic effects of biological invasions: Reduction of the aggressive behaviour of a native fish under the influence of an “invasive” biomolecule

por Magliozzi, Laura, Almada, Frederico, Robalo, Joana, Mollo, Ernesto, Polese, Gianluca, Gonçalves, Emanuel J., Felline, Serena, Terlizzi, Antonio, D’Aniello, Biagio
Publicado 2017

Painted Goby Larvae under High-CO(2) Fail to Recognize Reef Sounds

por Castro, Joana M., Amorim, M. Clara P., Oliveira, Ana P., Gonçalves, Emanuel J., Munday, Philip L., Simpson, Stephen D., Faria, Ana M.
Publicado 2017

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells

por Gonçalves, Emanuel, Sciacovelli, Marco, Costa, Ana S.H., Tran, Maxine Gia Binh, Johnson, Timothy Isaac, Machado, Daniel, Frezza, Christian, Saez-Rodriguez, Julio
Publicado 2018

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms

por Terfve, Camille, Cokelaer, Thomas, Henriques, David, MacNamara, Aidan, Goncalves, Emanuel, Morris, Melody K, Iersel, Martijn van, Lauffenburger, Douglas A, Saez-Rodriguez, Julio
Publicado 2012

Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects

por Gonçalves, Emanuel, Behan, Fiona M., Louzada, Sandra, Arnol, Damien, Stronach, Euan A., Yang, Fengtang, Yusa, Kosuke, Stegle, Oliver, Iorio, Francesco, Garnett, Mathew J.
Publicado 2019

Project Score database: a resource for investigating cancer cell dependencies and prioritizing therapeutic targets

por Dwane, Lisa, Behan, Fiona M, Gonçalves, Emanuel, Lightfoot, Howard, Yang, Wanjuan, van der Meer, Dieudonne, Shepherd, Rebecca, Pignatelli, Miguel, Iorio, Francesco, Garnett, Mathew J
Publicado 2020