A state-of-the-art methodology for high-throughput in silico vaccine discovery against protozoan parasites and exemplified with discovered candidates for Toxoplasma gondii

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2023

Evaluating High-Throughput Ab Initio Gene Finders to Discover Proteins Encoded in Eukaryotic Pathogen Genomes Missed by Laboratory Techniques

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2012

A novel strategy for classifying the output from an in silico vaccine discovery pipeline for eukaryotic pathogens using machine learning algorithms

por Goodswen, Stephen J, Kennedy, Paul J, Ellis, John T
Publicado 2013

Vacceed: a high-throughput in silico vaccine candidate discovery pipeline for eukaryotic pathogens based on reverse vaccinology

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2014

Enhancing In Silico Protein-Based Vaccine Discovery for Eukaryotic Pathogens Using Predicted Peptide-MHC Binding and Peptide Conservation Scores

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2014

A Gene-Based Positive Selection Detection Approach to Identify Vaccine Candidates Using Toxoplasma gondii as a Test Case Protozoan Pathogen

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2018

Applying Machine Learning to Predict the Exportome of Bovine and Canine Babesia Species That Cause Babesiosis

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2021

Predicting Protein Therapeutic Candidates for Bovine Babesiosis Using Secondary Structure Properties and Machine Learning

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2021

Compilation of parasitic immunogenic proteins from 30 years of published research using machine learning and natural language processing

por Goodswen, Stephen J., Kennedy, Paul J., Ellis, John T.
Publicado 2022

The Core Mouse Response to Infection by Neospora Caninum Defined by Gene Set Enrichment Analyses

por Ellis, John, Goodswen, Stephen, Kennedy, Paul J, Bush, Stephen
Publicado 2012

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases

por Goodswen, Stephen J, Gondro, Cedric, Watson-Haigh, Nathan S, Kadarmideen, Haja N
Publicado 2010

Machine learning and applications in microbiology

por Goodswen, Stephen J, Barratt, Joel L N, Kennedy, Paul J, Kaufer, Alexa, Calarco, Larissa, Ellis, John T
Publicado 2021