Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

por Thuesen, Nikolas Hallberg, Klausen, Michael Schantz, Gopalakrishnan, Shyam, Trolle, Thomas, Renaud, Gabriel
Publicado 2022

HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph

por Rubin, Joshua Daniel, Vogel, Nicola Alexandra, Gopalakrishnan, Shyam, Sackett, Peter Wad, Renaud, Gabriel
Publicado 2023

The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

por Sinding, Mikkel-Holger S., Gopalakrishnan, Shyam, Raundrup, Katrine, Dalén, Love, Threlfall, Jonathan, Gilbert, Tom
Publicado 2021

Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū

por Niemann, Jonas, Gopalakrishnan, Shyam, Yamaguchi, Nobuyuki, Ramos-Madrigal, Jazmín, Wales, Nathan, Gilbert, M. Thomas P., Sinding, Mikkel-Holger S.
Publicado 2020

Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)

por Garrett, Phen, Becher, Hannes, Gussarova, Galina, dePamphilis, Claude W., Ness, Rob W., Gopalakrishnan, Shyam, Twyford, Alex D.
Publicado 2022

Mapping of Craniofacial Traits in Outbred Mice Identifies Major Developmental Genes Involved in Shape Determination

por Pallares, Luisa F., Carbonetto, Peter, Gopalakrishnan, Shyam, Parker, Clarissa C., Ackert-Bicknell, Cheryl L., Palmer, Abraham A., Tautz, Diethard
Publicado 2015

Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats

por Gileta, Alexander F., Gao, Jianjun, Chitre, Apurva S., Bimschleger, Hannah V., St. Pierre, Celine L., Gopalakrishnan, Shyam, Palmer, Abraham A.
Publicado 2020

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

por Bohmann, Kristine, Gopalakrishnan, Shyam, Nielsen, Martin, Nielsen, Luisa dos Santos Bay, Jones, Gareth, Streicker, Daniel G., Gilbert, M. Thomas P.
Publicado 2018

Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research

por Nyholm, Lasse, Koziol, Adam, Marcos, Sofia, Botnen, Amanda Bolt, Aizpurua, Ostaizka, Gopalakrishnan, Shyam, Limborg, Morten T., Gilbert, M.Thomas P., Alberdi, Antton
Publicado 2020

Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility

por Zou, Jennifer, Gopalakrishnan, Shyam, Parker, Clarissa C, Nicod, Jerome, Mott, Richard, Cai, Na, Lionikas, Arimantas, Davies, Robert W, Palmer, Abraham A, Flint, Jonathan
Publicado 2021

Dealing with dimensionality: the application of machine learning to multi-omics data

por Feldner-Busztin, Dylan, Firbas Nisantzis, Panos, Edmunds, Shelley Jane, Boza, Gergely, Racimo, Fernando, Gopalakrishnan, Shyam, Limborg, Morten Tønsberg, Lahti, Leo, de Polavieja, Gonzalo G
Publicado 2023

Hybridization between two high Arctic cetaceans confirmed by genomic analysis

por Skovrind, Mikkel, Castruita, Jose Alfredo Samaniego, Haile, James, Treadaway, Eve C., Gopalakrishnan, Shyam, Westbury, Michael V., Heide-Jørgensen, Mads Peter, Szpak, Paul, Lorenzen, Eline D.
Publicado 2019

Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences

por Hernández-Alonso, Germán, Ramos-Madrigal, Jazmín, van Grouw, Hein, Ciucani, Marta Maria, Cavill, Emily Louisa, Sinding, Mikkel-Holger S, Gopalakrishnan, Shyam, Pacheco, George, Gilbert, M Thomas P
Publicado 2023

A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

por Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, Madeleine, Hansen, Martin, Forberg, Torunn, Gopalakrishnan, Shyam, Gilbert, M. Thomas P., Bojesen, Anders Miki, Kristiansen, Karsten, Limborg, Morten Tønsberg
Publicado 2022

Probing the genomic limits of de-extinction in the Christmas Island rat

por Lin, Jianqing, Duchêne, David, Carøe, Christian, Smith, Oliver, Ciucani, Marta Maria, Niemann, Jonas, Richmond, Douglas, Greenwood, Alex D., MacPhee, Ross, Zhang, Guojie, Gopalakrishnan, Shyam, Gilbert, M. Thomas P.
Publicado 2022

Genome-wide association study of behavioral, physiological and gene expression traits in commercially available outbred CFW mice

por Parker, Clarissa C., Gopalakrishnan, Shyam, Carbonetto, Peter, Gonzales, Natalia M., Leung, Emily, Park, Yeonhee J, Aryee, Emmanuel, Davis, Joe, Blizard, David A., Ackert-Bicknell, Cheryl L., Lionikas, Arimantas, Pritchard, Jonathan K., Palmer, Abraham A.
Publicado 2016

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

por Fotakis, Anna K., Denham, Sean D., Mackie, Meaghan, Orbegozo, Miren Iraeta, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper V., Cappellini, Enrico, Zhang, Guojie, Christophersen, Axel, Gilbert, M. Thomas P., Vågene, Åshild J.
Publicado 2020

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

por Gopalakrishnan, Shyam, Samaniego Castruita, Jose A., Sinding, Mikkel-Holger S., Kuderna, Lukas F. K., Räikkönen, Jannikke, Petersen, Bent, Sicheritz-Ponten, Thomas, Larson, Greger, Orlando, Ludovic, Marques-Bonet, Tomas, Hansen, Anders J., Dalén, Love, Gilbert, M. Thomas P.
Publicado 2017

Ancient Maltese genomes and the genetic geography of Neolithic Europe

por Ariano, Bruno, Mattiangeli, Valeria, Breslin, Emily M., Parkinson, Eóin W., McLaughlin, T. Rowan, Thompson, Jess E., Power, Ronika K., Stock, Jay T., Mercieca-Spiteri, Bernardette, Stoddart, Simon, Malone, Caroline, Gopalakrishnan, Shyam, Cassidy, Lara M., Bradley, Daniel G.
Publicado 2022

Variation in the Form of Pavlovian Conditioned Approach Behavior among Outbred Male Sprague-Dawley Rats from Different Vendors and Colonies: Sign-Tracking vs. Goal-Tracking

por Fitzpatrick, Christopher J., Gopalakrishnan, Shyam, Cogan, Elizabeth S., Yager, Lindsay M., Meyer, Paul J., Lovic, Vedran, Saunders, Benjamin T., Parker, Clarissa C., Gonzales, Natalia M., Aryee, Emmanuel, Flagel, Shelly B., Palmer, Abraham A., Robinson, Terry E., Morrow, Jonathan D.
Publicado 2013