PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

por Gordon, Sean P., Levy, Joshua J., Vogel, John P.
Publicado 2019

Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium dista...

por Stritt, Christoph, Gordon, Sean P, Wicker, Thomas, Vogel, John P, Roulin, Anne C
Publicado 2017

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

por Bragg, Jennifer N., Wu, Jiajie, Gordon, Sean P., Guttman, Mara E., Thilmony, Roger, Lazo, Gerard R., Gu, Yong Q., Vogel, John P.
Publicado 2012

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

por Contreras-Moreira, Bruno, Cantalapiedra, Carlos P., García-Pereira, María J., Gordon, Sean P., Vogel, John P., Igartua, Ernesto, Casas, Ana M., Vinuesa, Pablo
Publicado 2017

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei

por Dinh Thi, Vinh Ha, Coriton, Olivier, Le Clainche, Isabelle, Arnaud, Dominique, Gordon, Sean P., Linc, Gabriella, Catalan, Pilar, Hasterok, Robert, Vogel, John P., Jahier, Joseph, Chalhoub, Boulos
Publicado 2016

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

por Gordon, Sean P., Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V., Figueroa, Melania, Schilling, Jonathan S., Chen, Feng, Wang, Zhong
Publicado 2015

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

por Wilson, Pip B., Streich, Jared C., Murray, Kevin D., Eichten, Steve R., Cheng, Riyan, Aitken, Nicola C., Spokas, Kurt, Warthmann, Norman, Gordon, Sean P., Vogel, John P., Borevitz, Justin O.
Publicado 2019

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

por Henningsen, Eva C., Omidvar, Vahid, Della Coletta, Rafael, Michno, Jean-Michel, Gilbert, Erin, Li, Feng, Miller, Marisa E., Myers, Chad L., Gordon, Sean P., Vogel, John P., Steffenson, Brian J., Kianian, Shahryar F., Hirsch, Cory D., Figueroa, Melania
Publicado 2021

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

por Rabe, Franziska, Bosch, Jason, Stirnberg, Alexandra, Guse, Tilo, Bauer, Lisa, Seitner, Denise, Rabanal, Fernando A, Czedik-Eysenberg, Angelika, Uhse, Simon, Bindics, Janos, Genenncher, Bianca, Navarrete, Fernando, Kellner, Ronny, Ekker, Heinz, Kumlehn, Jochen, Vogel, John P, Gordon, Sean P, Marcel, Thierry C, Münsterkötter, Martin, Walter, Mathias C, Sieber, Christian MK, Mannhaupt, Gertrud, Güldener, Ulrich, Kahmann, Regine, Djamei, Armin
Publicado 2016

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

por Lovell, John T., Jenkins, Jerry, Lowry, David B., Mamidi, Sujan, Sreedasyam, Avinash, Weng, Xiaoyu, Barry, Kerrie, Bonnette, Jason, Campitelli, Brandon, Daum, Chris, Gordon, Sean P., Gould, Billie A., Khasanova, Albina, Lipzen, Anna, MacQueen, Alice, Palacio-Mejía, Juan Diego, Plott, Christopher, Shakirov, Eugene V., Shu, Shengqiang, Yoshinaga, Yuko, Zane, Matt, Kudrna, Dave, Talag, Jason D., Rokhsar, Daniel, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E.
Publicado 2018

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

por Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.
Publicado 2017

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

por Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Publicado 2020