BioRuby: bioinformatics software for the Ruby programming language

por Goto, Naohisa, Prins, Pjotr, Nakao, Mitsuteru, Bonnal, Raoul, Aerts, Jan, Katayama, Toshiaki
Publicado 2010

A comprehensive analysis of reassortment in influenza A virus

por de Silva, U. Chandimal, Tanaka, Hokuto, Nakamura, Shota, Goto, Naohisa, Yasunaga, Teruo
Publicado 2012

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

por Cock, Peter J. A., Fields, Christopher J., Goto, Naohisa, Heuer, Michael L., Rice, Peter M.
Publicado 2010

Sharing Programming Resources Between Bio* Projects

por Bonnal, Raoul J. P., Yates, Andrew, Goto, Naohisa, Gautier, Laurent, Willis, Scooter, Fields, Christopher, Katayama, Toshiaki, Prins, Pjotr
Publicado 2019

A new approach to identifying hypertension-associated genes in the mesenteric artery of spontaneously hypertensive rats and stroke-prone spontaneously hypertensive rats

por Ikawa, Takashi, Watanabe, Yuko, Okuzaki, Daisuke, Goto, Naohisa, Okamura, Nobutaka, Yamanishi, Kyosuke, Higashino, Toshihide, Yamanishi, Hiromichi, Okamura, Haruki, Higashino, Hideaki
Publicado 2019

Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

por Miyamoto, Mari, Motooka, Daisuke, Gotoh, Kazuyoshi, Imai, Takamasa, Yoshitake, Kazutoshi, Goto, Naohisa, Iida, Tetsuya, Yasunaga, Teruo, Horii, Toshihiro, Arakawa, Kazuharu, Kasahara, Masahiro, Nakamura, Shota
Publicado 2014

Fungal ITS1 Deep-Sequencing Strategies to Reconstruct the Composition of a 26-Species Community and Evaluation of the Gut Mycobiota of Healthy Japanese Individuals

por Motooka, Daisuke, Fujimoto, Kosuke, Tanaka, Reiko, Yaguchi, Takashi, Gotoh, Kazuyoshi, Maeda, Yuichi, Furuta, Yoki, Kurakawa, Takashi, Goto, Naohisa, Yasunaga, Teruo, Narazaki, Masashi, Kumanogoh, Atsushi, Horii, Toshihiro, Iida, Tetsuya, Takeda, Kiyoshi, Nakamura, Shota
Publicado 2017

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

por Bonnal, Raoul J.P., Aerts, Jan, Githinji, George, Goto, Naohisa, MacLean, Dan, Miller, Chase A., Mishima, Hiroyuki, Pagani, Massimiliano, Ramirez-Gonzalez, Ricardo, Smant, Geert, Strozzi, Francesco, Syme, Rob, Vos, Rutger, Wennblom, Trevor J., Woodcroft, Ben J., Katayama, Toshiaki, Prins, Pjotr
Publicado 2012

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

por Nakamura, Shota, Yang, Cheng-Song, Sakon, Naomi, Ueda, Mayo, Tougan, Takahiro, Yamashita, Akifumi, Goto, Naohisa, Takahashi, Kazuo, Yasunaga, Teruo, Ikuta, Kazuyoshi, Mizutani, Tetsuya, Okamoto, Yoshiko, Tagami, Michihira, Morita, Ryoji, Maeda, Norihiro, Kawai, Jun, Hayashizaki, Yoshihide, Nagai, Yoshiyuki, Horii, Toshihiro, Iida, Tetsuya, Nakaya, Takaaki
Publicado 2009

Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

por Tachibana, Shin-Ichiro, Sullivan, Steven A, Kawai, Satoru, Nakamura, Shota, Kim, Hyunjae R, Goto, Naohisa, Arisue, Nobuko, Palacpac, Nirianne M Q, Honma, Hajime, Yagi, Masanori, Tougan, Takahiro, Katakai, Yuko, Kaneko, Osamu, Mita, Toshihiro, Kita, Kiyoshi, Yasutomi, Yasuhiro, Sutton, Patrick L, Shakhbatyan, Rimma, Horii, Toshihiro, Yasunaga, Teruo, Barnwell, John W, Escalante, Ananias A, Carlton, Jane M, Tanabe, Kazuyuki
Publicado 2012

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

por Lapp, Hilmar, Bala, Sendu, Balhoff, James P., Bouck, Amy, Goto, Naohisa, Holder, Mark, Holland, Richard, Holloway, Alisha, Katayama, Toshiaki, Lewis, Paul O., Mackey, Aaron J., Osborne, Brian I., Piel, William H., Kosakovsky Pond, Sergei L., Poon, Art F.Y., Qiu, Wei-Gang, Stajich, Jason E., Stoltzfus, Arlin, Thierer, Tobias, Vilella, Albert J., Vos, Rutger A., Zmasek, Christian M., Zwickl, Derrick J., Vision, Todd J.
Publicado 2007

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

por Katayama, Toshiaki, Wilkinson, Mark D, Vos, Rutger, Kawashima, Takeshi, Kawashima, Shuichi, Nakao, Mitsuteru, Yamamoto, Yasunori, Chun, Hong-Woo, Yamaguchi, Atsuko, Kawano, Shin, Aerts, Jan, Aoki-Kinoshita, Kiyoko F, Arakawa, Kazuharu, Aranda, Bruno, Bonnal, Raoul JP, Fernández, José M, Fujisawa, Takatomo, Gordon, Paul MK, Goto, Naohisa, Haider, Syed, Harris, Todd, Hatakeyama, Takashi, Ho, Isaac, Itoh, Masumi, Kasprzyk, Arek, Kido, Nobuhiro, Kim, Young-Joo, Kinjo, Akira R, Konishi, Fumikazu, Kovarskaya, Yulia, von Kuster, Greg, Labarga, Alberto, Limviphuvadh, Vachiranee, McCarthy, Luke, Nakamura, Yasukazu, Nam, Yunsun, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Oinn, Tom, Okamoto, Shinobu, Okuda, Shujiro, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Putnam, Nicholas, Senger, Martin, Severin, Jessica, Shigemoto, Yasumasa, Sugawara, Hideaki, Taylor, James, Trelles, Oswaldo, Yamasaki, Chisato, Yamashita, Riu, Satoh, Noriyuki, Takagi, Toshihisa
Publicado 2011

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

por Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul JP, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul MK, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa
Publicado 2010

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

por Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul JP, Chapman, Brad, Cock, Peter JA, Eriksson, Tore, Gordon, Paul MK, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa
Publicado 2013

BioHackathon 2015: Semantics of data for life sciences and reproducible research

por Vos, Rutger A., Katayama, Toshiaki, Mishima, Hiroyuki, Kawano, Shin, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Tokimatsu, Toshiaki, Yamaguchi, Atsuko, Yamamoto, Yasunori, Wu, Hongyan, Amstutz, Peter, Antezana, Erick, Aoki, Nobuyuki P., Arakawa, Kazuharu, Bolleman, Jerven T., Bolton, Evan, Bonnal, Raoul J. P., Bono, Hidemasa, Burger, Kees, Chiba, Hirokazu, Cohen, Kevin B., Deutsch, Eric W., Fernández-Breis, Jesualdo T., Fu, Gang, Fujisawa, Takatomo, Fukushima, Atsushi, García, Alexander, Goto, Naohisa, Groza, Tudor, Hercus, Colin, Hoehndorf, Robert, Itaya, Kotone, Juty, Nick, Kawashima, Takeshi, Kim, Jee-Hyub, Kinjo, Akira R., Kotera, Masaaki, Kozaki, Kouji, Kumagai, Sadahiro, Kushida, Tatsuya, Lütteke, Thomas, Matsubara, Masaaki, Miyamoto, Joe, Mohsen, Attayeb, Mori, Hiroshi, Naito, Yuki, Nakazato, Takeru, Nguyen-Xuan, Jeremy, Nishida, Kozo, Nishida, Naoki, Nishide, Hiroyo, Ogishima, Soichi, Ohta, Tazro, Okuda, Shujiro, Paten, Benedict, Perret, Jean-Luc, Prathipati, Philip, Prins, Pjotr, Queralt-Rosinach, Núria, Shinmachi, Daisuke, Suzuki, Shinya, Tabata, Tsuyosi, Takatsuki, Terue, Taylor, Kieron, Thompson, Mark, Uchiyama, Ikuo, Vieira, Bruno, Wei, Chih-Hsuan, Wilkinson, Mark, Yamada, Issaku, Yamanaka, Ryota, Yoshitake, Kazutoshi, Yoshizawa, Akiyasu C., Dumontier, Michel, Kosaki, Kenjiro, Takagi, Toshihisa
Publicado 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

por Katayama, Toshiaki, Wilkinson, Mark D, Aoki-Kinoshita, Kiyoko F, Kawashima, Shuichi, Yamamoto, Yasunori, Yamaguchi, Atsuko, Okamoto, Shinobu, Kawano, Shin, Kim, Jin-Dong, Wang, Yue, Wu, Hongyan, Kano, Yoshinobu, Ono, Hiromasa, Bono, Hidemasa, Kocbek, Simon, Aerts, Jan, Akune, Yukie, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Baran, Joachim, Bolleman, Jerven, Bonnal, Raoul JP, Buttigieg, Pier Luigi, Campbell, Matthew P, Chen, Yi-an, Chiba, Hirokazu, Cock, Peter JA, Cohen, K Bretonnel, Constantin, Alexandru, Duck, Geraint, Dumontier, Michel, Fujisawa, Takatomo, Fujiwara, Toyofumi, Goto, Naohisa, Hoehndorf, Robert, Igarashi, Yoshinobu, Itaya, Hidetoshi, Ito, Maori, Iwasaki, Wataru, Kalaš, Matúš, Katoda, Takeo, Kim, Taehong, Kokubu, Anna, Komiyama, Yusuke, Kotera, Masaaki, Laibe, Camille, Lapp, Hilmar, Lütteke, Thomas, Marshall, M Scott, Mori, Takaaki, Mori, Hiroshi, Morita, Mizuki, Murakami, Katsuhiko, Nakao, Mitsuteru, Narimatsu, Hisashi, Nishide, Hiroyo, Nishimura, Yosuke, Nystrom-Persson, Johan, Ogishima, Soichi, Okamura, Yasunobu, Okuda, Shujiro, Oshita, Kazuki, Packer, Nicki H, Prins, Pjotr, Ranzinger, Rene, Rocca-Serra, Philippe, Sansone, Susanna, Sawaki, Hiromichi, Shin, Sung-Ho, Splendiani, Andrea, Strozzi, Francesco, Tadaka, Shu, Toukach, Philip, Uchiyama, Ikuo, Umezaki, Masahito, Vos, Rutger, Whetzel, Patricia L, Yamada, Issaku, Yamasaki, Chisato, Yamashita, Riu, York, William S, Zmasek, Christian M, Kawamoto, Shoko, Takagi, Toshihisa
Publicado 2014